RNA id: XM_043242891.1


Basic Information

Item Value
RNA id XM_043242891.1
length 2235
RNA type mRNA
GC content 0.44
exon number 7
gene id eefsec
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19988919 ~ 19994672 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGATCAACTGTCACATTTTAGAAAAGTTTGCTAAATACAGCAAGAGCAGAAATATTTAGCATGTACTGTAATCTCTCATTTCAGAATTAATAAATGGGTATTACTCAACTCCAAACAAATTAGAGACTGGTTAACTGGCAGTTTAATATTGGGCTGGTTGGTTAGATCCAGCAGCGTTGTTGCTGTCAGCAGTTCAAAGTCTGCGCATTTATTCTGTTACTCAAGAGTCGTGCTGCTTCAGTCATGGCAGATCCCAGTCCTGCTAAAACGCTAAACTTTAACGTTGGTGTCCTCGGCCATGTGGACAGTGGAAAAACGTCTCTCGCCCGTGCGCTGAGCAGCACCGCCTCCACCGCAGCCTTCGACAAGAACCCGCAGTCCAAAGAACGAGGCATCACGCTGGATCTCGGATTTAGCGCGTTCACGGTGCCGTTACCGGAGCACCTGAAAGAGTCCTGCGGGGAAAGACAATACGACAGTCTGCAGTTCACACTGGTGGACTGCCCAGGACATGCCTCTCTTATACGCACTATTATTGGGGGTGCTCAGATCATCGATCTGATGATGTTAGTAGTTGACGTTGTGAAAGGCATGCAGACACAAACGGCAGAGTGCCTTTTGATTGGTCAGCTTACCTGCTCCCACATGATCGTCATCCTCAACAAAACAGACCTGTTGCCTAATGACAAGAGACAGGCAGCTATTGACAAAATGACCAAGAGGATGCACAAAACTCTTGAGAACACAAGATTTAAAGGCTGTCCTATTATTGCTGTAGCAGCAAAGCCAGGTGGTCCTGAGGCCCCAGAAACAGATGAGCCACAAGGAATAACTGAACTCATAGACTTATTGAAGGCCCAAGCATTCTTTCCTCAAAGAGATCCATCAGGGTCTCTTTTAATGGCTGTAGATCACTGCTTCTCCATCCGTGGCCAAGGAACAGTCATTACCGGGACCATCCTACAAGGGTCCCTTAGTGTCAATGATAATGTGGAAATACCAGCATTAAAGGTAACTCGCAAGGTCAAATCTGTGCAGATGTTTCGTAAGCCAGTTCCTAGTGCTATGCAAGGGGATCgagttggtgtgtgtgtgacacagtTTGATCCAAAACTGTTAGAACGAGGTGTAGTATGCACACCAGGCTCATTGCAGACTCTTTACGCTGCTGTTATATCCGTCCAAAAGATTGAATACTATCGTGGAGCACTTACCAGCCGTGCAAAGTTTCACATCACCGTTGGACACGAAACTGTTATGGCAcgcatttcatttttcaatcGAGTGCTTCTAGGCGATGAAAATGGAGACTGTAACCCCATCTCTCCAgagcaaaatgtaaaatctttcTCGTTTGATTGGGAGCTTCACCACTTGGATGAGTATTTGACTTGTCAGGCAGAAGGTGGGAGAGGGGAACCACAGCAGTGGGCTTTACTCGAGTTTGAACGACCGGTCACATGTCCACCGCTTTGCTTAGTGATTGGGTCACGACTGGATTCGGATATCCACGGTAACGCATGCAGGCTTGCCTTTCATGGAAAGCTTCTAGAAGGCTTTGAGGACAAAAACTACACAGAGACAGCACTGCCTCGTCTCAAAATCAGCAAAGACAAGCAGAAAGAAGGAGCAGTGGAACGGGTCACTGATGACTACACTGTGATTGGCCGAAACTTGTTTAAGAAGGAGACAAACCTTCAGCTGTTTGTGGGTTTAAAAATTACACTGTCAACAGGAGAAACAGGAACCATTGAAGGTAGCTTTGGCCAAAGTGGTAAAATCAAAATCAGAATACCAGAGGGGCTGAAAGAAGAAACCAAGCAGCTTTTATCCTCTTCCTCTAAGAAGAAGGGGAAGTGTGGGGCCAAAAATGAATCCTCCAAATCGGAGGAAACTAAGCTTGATGCTCAGCCAGTCACTATACATCTCAACTTCAAACGCTATATATATGATCCCCAAAAAAAGATGGTACAGTCCTGACCATCAGTCCAGTCGTTCATAATAAATGCTGGCAGGAAAGGGACACACTGAGCGTATACTGATAAAGTCTGGATATGCAACATAAATatcttgtacttttttttcttgtgtgcaGAGTTTCTATACTGCTACTTTGCACTCGTTTATTCCTTCAAATCtggaataataaaaatcaacaaaagagaaaaGGTCATTCCTGTACTTAATAAATTCTGTTATATGACTGCTAATAAAACAACTATTAGCTAAACTGC

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69340 lncRNA downstream 20459 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 32189 19899705 ~ 19956730 (-) False LOC122347177
TU69310 lncRNA downstream 108331 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 108337 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 110242 19877328 ~ 19878677 (-) True LOC122347207
TU69356 lncRNA upstream 3960 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 60194 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 105974 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 133276 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 154875 20149547 ~ 20152787 (-) True G46838
XM_043242637.1 mRNA downstream 22495 19965403 ~ 19966424 (-) True LOC122347402
XM_043242356.1 mRNA downstream 24098 19961196 ~ 19964821 (-) True arpc4
XM_043242357.1 mRNA downstream 29262 19949312 ~ 19959657 (-) True LOC122347206
XM_043242332.1 mRNA downstream 54494 19928355 ~ 19934425 (-) True p4htmb
XM_043242327.1 mRNA downstream 67641 19918053 ~ 19921278 (-) True kbtbd12
XM_043241479.1 mRNA upstream 4137 19998809 ~ 20000638 (-) False mustn1a
XM_043241480.1 mRNA upstream 4137 19998809 ~ 20000626 (-) False mustn1a
XM_043241475.1 mRNA upstream 6428 20001100 ~ 20004685 (-) True rft1
XM_043241477.1 mRNA upstream 11382 20006054 ~ 20009354 (-) True sirt4
XM_043241473.1 mRNA upstream 14842 20009514 ~ 20016235 (-) True zgc:172271
TU69304 other downstream 141521 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 322413 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 432988 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 432988 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 839189 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 101717 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 166768 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 534507 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2745300 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2745300 22739972 ~ 22750947 (-) False tardbpb

Expression Profile