RNA id: XM_043242907.1


Basic Information

Item Value
RNA id XM_043242907.1
length 1685
RNA type mRNA
GC content 0.42
exon number 12
gene id ttc4
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14197692 ~ 14200743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atGGCTGCGCCAGCTCAAGGCGAGGACAGTGACGATGGTATGGATGAATATGAGAAgtttaaaacacagaaatacaaaaatgcgTTTAATGAAAGCAGCTGGGAGGAGGAGTTTGATAAGGTGCCCATGTTCATGAAGACAGCCCCAGAAAACATAGATCCAGAGAAACCTGATCTTGCCTGCATTCAGTCTATTATCCATGATGATGACAGAACACCAGAGGagaaAGCCAGAAGTCTAAAGGATGAAGGCAATGAGTACTTTAAGGAGAAAAATTATAAGAAAGCCATAGTGTCTTACACAGAAGGATTGAAAAAGAACTGCATGGATATTGAACTCAATGCGGTTTTGCACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCAGCGTTGAATGATGCCACAGCTGCAAAAAAACTGAAGCCAGACCACCATAAAGCTATAATCAGAGGTGCACAGTGCTCAGTGGAGCTGCGTGATTATGCAGGAGCCTTGCAGTGGTGTGTGAAGGTCTCTCGACTGATTCCCACTGACAGGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGAGGGAAGCTGACAGAGATGCCAGGAAGGCAAAAGTCAAAGCGAAAAAGGAGCAGAATGAGAAGGAAGCATTGTTAGCTGCCATTAAGgagCGTGGCATTAAACTTCTGAAGACCGAGACTTCTCAACACAGGGGTTCGGAcagtgaggatgatgatggtgcATCTAGAGCCCTAGCGGATCTGGAGCTTGATGGAATTGGCTCCCAGGAGGCCACTGGAGCTCGTGTTTATATGGATGAGCAGGGGGTCCTTCACTGGCCGGTGCTTTTCCTCTACCCCGAGCACAGCCAGACGGACTTCATATCTGCCTTCTGCGAGAACTCCAGCTTCATGGACCATTTGGCAGTTATGTTTGGTGAAGAGCTTCCCCCCTGGGATTCAGAAAGAAAATACCAGCCACAAAATCTACAGctgttttttgaGGATCACAAAAAAGGAAGCCTTTATCAAGTCGATCTCGAAAAGTCACTTCTTAACGTTCTTCAGCACCAAAGgtgCTCGGTGAAGGCAGGGACACCTAGTTTCATTGTGCTGGTATCAGGCTCTCCGTTTTCTAAGCAgtttttatcagaaaaaaaggtcCAGAGATTGAAATGATGGTCTGTTTGGACCTTAAAAGACTTGAAACGCCTTGGCTATAAATCACCCTCCTGCTATTAAGGGCATTTCTGCTCGCCTCACCCTTTGAGAAAACTCTAGAGATTAAGGCAGAACTTTTGAAGTGGATTTCCTTTGCAGCAACATTAATGATTCACTTTAAAAGCATGTACTATCCCAACCCTCACCCATTTTGGTGGAGGAAAAAATTCTTTCATGTGCAGTTTGAGGTATGAGTCATTACATGTGTAAGATACACATATAAAGctgattatttttagattagtCAGTATTTAACTGTGCATTTTTACTGTTGctcatattgttccaaatagtgtttttttttttttttttcaatggaaCACTCAAGAAAATATTAACCATGGAACATTTTGACTTCCATTTGAgttgacagaaaaacaatgagacacttcttaaaatataagaaagtcatacagtttTGGAATGTCATGagtatgaataaatgatgacagaattca

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66938 lncRNA downstream 215807 13981229 ~ 13981885 (-) True G45225
TU66908 lncRNA downstream 225598 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA downstream 225598 13953479 ~ 13972094 (-) False G45206
TU66905 lncRNA downstream 225598 13968313 ~ 13972094 (-) True G45206
TU66895 lncRNA downstream 336247 13861235 ~ 13861445 (-) True G45198
TU67006 lncRNA upstream 10623 14211366 ~ 14212986 (-) True G45270
TU67008 lncRNA upstream 13895 14214638 ~ 14216276 (-) True G45271
XR_006251154.1 lncRNA upstream 63046 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA upstream 63046 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA upstream 63124 14263867 ~ 14279026 (-) False LOC122346673
XM_043242836.1 mRNA downstream 7363 14179872 ~ 14190329 (-) True lurap1
XM_043241204.1 mRNA downstream 69375 14126574 ~ 14128317 (-) True cldn33b
XM_043242271.1 mRNA downstream 157529 13986047 ~ 14040163 (-) True lrrc7
XM_043241825.1 mRNA downstream 411791 13722309 ~ 13785901 (-) False pex5la
XM_043241459.1 mRNA upstream 84754 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA upstream 84754 14285497 ~ 14363385 (-) False pde4ba
XM_043241461.1 mRNA upstream 84754 14285497 ~ 14335649 (-) False pde4ba
XM_043241462.1 mRNA upstream 84754 14285497 ~ 14328201 (-) False pde4ba
XM_043241464.1 mRNA upstream 84754 14285497 ~ 14292171 (-) False pde4ba
TU66983 other downstream 4526 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 516418 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 729753 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 730127 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 730466 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 1128224 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1403167 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1858225 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1859150 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 2160457 16361200 ~ 16364020 (-) False fam183a

Expression Profile