RNA id: XM_043242954.1


Basic Information

Item Value
RNA id XM_043242954.1
length 5000
RNA type mRNA
GC content 0.46
exon number 9
gene id ror1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14657884 ~ 14757952 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTCTGCAGCTTACTTCTCTAACCCTTGAGGGCTGTACTATCAAGAGACTATCCGTATGATCGACAGAAGAGAAAACTGGAGGCTGCTAAAGCTGTAGACATCCCACTGGCACTTTCTCCAAAGCTGGCTAAGCAACAAGAGGAAGACTGGGCTggaagaaaagagaaataataaaTGGCTGGGCAGAGATTCCTTCAGACCCAAAAGTGGAGGCCGCTTCCAGTTGGAACATGTCCAGCGGAGCTGAAAGAGATCACTTTCTAACGCTGGATGCTCCGATGAATAACATCACTACCTCCCTCGGACAGACAGCTGAGTTACATTGCCACGTTTCAGGGAATCCACCACCCACAGTCCGCTGGCTTAAAAACGATGCCCCTGTGGTCCAGGAACCGCGGCGTGTCTCTTACAGGCCCACTCCGTACGGTTCCCGACTGAGAATCCGAAACCTGGACACCACAGACACCGGCTACTTTCAGTGTGTGGCTACCAACACCTATGGCACAGTATCTACCACAGGAATCCTGTTTGTCAAGTTTGaTCCGGCTCCCACCCCTCTGCCTGGAAGGCCTTCACCagaTGATTTTGATGAGGAAGGTTTCTGCCAGCCATACAGAGGGATCGCGTGTGCTCGCTTCATAGGAAACAGGAGTATCTTCGTGGACTCTCTGCAAATGCAGGGCGAGATTGAGACCCAAATCACAGctgcGTTCACCATGATTGGCACCTCCAATCACCTATCAGATCGCTGCTCCCAGTTCGCTATCCCGTCCCTGTGCCATTTTGCCTTCCCGACATGTGACCGCAGCTCTGGCATGGACAAACCGCGGGACTTGTGCAAGGACGAGTGTGAGATTCTGGAGAACGACCTGTGTAAGACGGAGTACATCATCGCTCGCTCCAACCCCCTCATCCTCAAGCGCCTCAAACTGCCCAACTGTGAAGACCTGGCAGCTCTGGACAGTCCCGAAGCCTCCAACTGCATGAGAATAGGCATCCCAATAGCCGAGAccataaataaaaGCCACAAATGTTACAATAACAGCGGTTCGGATTATCGTGGGACAGTCAGCGTGACTAAATCTGGCCGTCAGTGTCAGCCGTGGAACTCGCAGTATCCCCACAGCCACACCTTCCTGGCCATGCGCTACCCAGAGCTCAACGGGGGACATTCCTACTGTCGCAACCCCGGAAACAAGCACGACGCTCCCTGGTGCTTCACCCTAGATGAGGGTGTGCGCATGGAGCTCTGCGACATTCCTCCATGTGATTTGCCCAAGcatggcagcagcagcagtatggGGATCCTGTACATCCTGGTACCAAGCGTTGCTATACCGCTGGCTATCGCCCTGCTGTTCTTCTTCATCTGTGTGTGCCGAAACAACCAGAAAGCCTCACGTCCACCAGCCCCACGTCAGCCCAAACCAGTACGTGGCCAGAACGTGGAGATGTCCATGCTCACCGCATACAAACCAAAGAGCAAAGCAAAAGAACTTCCTCTGTCTGCAGTGCGCTTCATGGAGGAGTTGGGTGAGAGCAACTTTGGCAAGATCTACAAAGGCCACCTGTACCTTCCAGGCATGGAGCAAGCTCAGCTAGTGGCcataaaaacactgaaggaCATCTCAAGTGCACAACATTGGGGCGATTTCCAACAGGAAGCATCTGTCCTGGCAGAACTTCATCACCCCAATGTGGTTTGCCTCCTGGGGGTCGTGACTCAGGAGCAGCCCGTCTGCATGCTCTTCGAGTTTCTAGCCCAAGGAGACCTCCACGAGTTCCTCATCATGCGATCTCCCCACTCAGACGTGGGCTGCAGCAGCGATGAAGACGGAACCGTCAAGTCCAGCCTCGATCACGGAGACTTCCTTCACCTGGCCATCCAAGTCGCAGCTGGGATGGAGTACCTCGCAAGCCACTTTTACGTCCACAAAGACCTTGCGGCAAGAAACATCCTGGTTGGTGAGCAGCTTCACATCAAGATCTCCGATCTTGGCTTGTCGAAAGAAATCTACGCCTCAGATTATTACAGAGTCCAACCCAAAACGCTCGTTCCTATTCGCTGGATGCCACCAGAAGCCATCATTTACGGGAAGTACACAACAGACTCTGACATTTGGGCGTTCGGTGTGGTTTTGTGGGAGATCTTCAGCTTCGGCCTGCAGCCCTATTATGGTTTCAGCAACCAGGAAGTGATGGAGATGGTACGGAAGAGGCAGCTTCTGCCCTGCCCAGAGGATTGCCCTCCTCGTATGTACGCGATGATGACCGAGTGCTGGCAGGAGGGTCCGGCTCGACGACCGAGATTCAAAGACATCCACGTCCGACTACGTGCTTGGGAGGGCCTGTCCTCCCACGCCAGCTCCAGCACGCCATCTGGAGGCAACGCCACCACCCAGACTACCTCTCTGAGCGCCAGCCCCGTCAGCAACCTCAGCAGCCCACGCTACGCCGGATACATCTATGGAGCTCCGCAGAGCCTCCCGCCAGGACAAATCGCTGGCTTCATGGCGGCACCGATGCCTCAAAGCCAGCGTTTTATACCTGTAAACGGATACCCTATCCCAACAGGCTACGCTGCCTTCCCTGCTGCCCATTTCGCTGCGACTCAGGGCCCTCCACAGGTGGTGCAGCACTGCCCTCCGCCGAAGAGCCGGTCGCCCAGCAGCGCCAGCGGCTCAACCAGCACGGGTCACGTGACCAGCGTCCCCTCCACAGGCTCTAATCATGATGCCAATACACCTTTGCTTTCTCATTGTGTCACTCTGACGCCCATATCAGCAGTGCCGGGCGGCACAATGCCAATGTTCGGACATATGGCACAGAAAGCCATGCAAATAGACCCGAGTCAGGCGGCGCTTTTGGCTGACACTAACAGACTGATATACAGTGAATCCATCATTACTGCCGATTTGTGAATACATGTTTTGTCCtgtatattgatttattgaattattgatatttttatgtcttttttcttccttgTAAATATGAAATAGCCTGAAAAAAATGcgaaagtttatattttaatgttgttttataaatgtgtcttaaagtgatagttcacatAAAAAATTTAACTCTGTCATTCATTACTCACCcgcatgttgtttttaaacctgtAAGACTTTAGTTCATCttagaaacacaaattaaggtatttttgatgaaatctcaAATCCGCATAGACAGAAAGAGAACTGtaccactgatgtcacacaaactattttaacaatgtccttactacctttttgGGCTGTCTATAAAGAGGCAGAAAGCTCTAGAATTACATcagaatatcttaaattgtgttcaggATATGACccaaggtcttatgggttttgGAAagtcatgagggtgagtaattaatgacagaatttaaatctttgggtgaactatccctttaaaagaaACTTGCATATTCACATATTCTCTGTGAAGTTAATGCCACTTTTTTTCGACAAAACGTGGCCTTAAAATGTCCTTCTTGCAACCAGAACTTTGAAATCATGACCTTTTTCAAGATTATTTTCGACAGAGCTGTCGGTTTATCATCcgttttgtgtgctttttcaCTCATTGACGACTTCAGTCTTGGTCCCTGTCCCttcactacattttttttgactTCGCTTGGACTTTTGGAATCGGTTAAATCactttattattgcattaaagTCCAACCCTATATACCCTAAGTTCCCAAATTAATGGAACACTTTTGCAATCACTGATGCCTTCATAtgaaaaaatgttgctttaattaTGGTCACCATACGTGCCTGCATTTTATTAGGAGGTCATGCATTTCTACATAAGAGAATGTGTTTTGTGACATTCTGCTGTTACTGTGGtgttattcaaattatttcaatACACAGGACACAGGGCTGTGTTCGCTGTAAGCCAGCGACTTCTCAGGCAGCATTTGTGTTTCTAAGGTACTGCCAGGCTTTTGAAGTGGCATGCGTAGCTGCAACAAAATAGTGAGAACTCCGGAGCTCACCAAGCATATATTTAAGCAtcttattattcattaattcattaagagaaattaaagagatagttcacccaaagatgaaCGTTTtaccatcatttactcacatatATCAATGAGGAAATCTAAGATGATAGGATGTGACACAATCATTGAATTCAGATGTGCCTTTTTGCCTTCCTACCTCCATATACAGCATTTCTTAGCTTTCGGACAACGCCtggatttttttggttttagagtaatataaataaaattcaggCAACCAGAAAACATTCTCATGATTTTTATACTCTGTACGTCTCTTAGCCCAGAGCAcacatgaatattttaaattgtcaggataacattttatttttctaactgAGTCAAATTTTCACATCACTGTTTGGCAAAGCGTATGTGAAATCTGTGCTAAtctgtttttctaaaataaacttCTCACTGCCTATAGAATGTAATGCCTCATAATTTCCTCTAGAGGTCAGTGTCACTCTGCGACTCTGATTGAAtgaagtttttttatatatatttgtctcaTGTTAATACTTTATGTGCTGGCGATTTTCAGCTTTCATTTGACGCTTGTCAACTTTATTCTCTCTCGAGTTTGTAACTTGTTTTAATCTCACAGAAACAGAgattaaacaaatcattttagtaaGCAGCTGTATGTCACGTTCATTCTAATTTTGGTTTGTTGCTATGCAACTGTTTAATTCAACGACACCCTTTTCCTGTGTTGAATACAATCGAGAATTTATCTTTTATGCAGGGTACAGTGTTTGTGAAGACATGATTGCTTGTGACCTGTGCCTTTTGGACAATCTCATGACGTGTCATGACATTTCATGAACGGACGTTTTGCATGATAAACAGATGTGTAGAtcaatggtttatttttatatgatttgtcACACAATTTTACAATATCCCAGTCTTATTAATGTACTTCTGAACATACAGTGTGTTGACATTATAAAAACCACTTAAAGAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251130.1 lncRNA downstream 1853 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 1853 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 163862 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 378858 14263867 ~ 14279026 (-) False LOC122346673
TU67118 lncRNA upstream 213271 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 410459 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 492921 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 492921 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 492921 15185152 ~ 15221025 (-) False G45543
XM_043242887.1 mRNA downstream 14896 14587270 ~ 14642988 (-) True cachd1
XM_043240967.1 mRNA downstream 74883 14523682 ~ 14583001 (-) False raver2
XM_043240966.1 mRNA downstream 74887 14523682 ~ 14582997 (-) True raver2
XM_043241214.1 mRNA downstream 166094 14485606 ~ 14491790 (-) False ak4
XM_043242115.1 mRNA upstream 70480 14762711 ~ 14769897 (-) True pgm1
XM_043242114.1 mRNA upstream 78751 14770982 ~ 14780729 (-) True efcab7
XM_043242738.1 mRNA upstream 97445 14789676 ~ 14801854 (-) True alg6
XM_043242739.1 mRNA upstream 97445 14789676 ~ 14801823 (-) False alg6
XM_043242976.1 mRNA upstream 113073 14805304 ~ 14812624 (-) True foxd3
TU66983 other downstream 464718 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 976610 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1189945 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1190319 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1190658 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 636736 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 911679 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1366737 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1367662 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1668969 16361200 ~ 16364020 (-) False fam183a

Expression Profile