RNA id: XM_043242960.1


Basic Information

Item Value
RNA id XM_043242960.1
length 1371
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122347578
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18763245 ~ 18765483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACATGGCGCGTCACAGTCTTTGTTTACAGGTCTGCCTTTTAGTCTTGAGAACGTATTTTAACATCCaaagtaatttaattcaatgtctTTATGCCGTCCAACGACAATGTCATAGACAACGTCTACGCTCAAGACGACAGattGCTTTGGTTATCATGAGAAGACGAACATCTGCTGTGTGGTCCTATCCTCGAGAGCACAAGTGGTGGGATACCATTGTCCCTGCATTCACTCCAGAACAGTTCATCCAGAATTTCCGGGTCTCGCGGGAGTCTTTTGAATACATCTGTTGTCGTCTCAGGCATGTACTTCAACGAAGGAACACCAATTTCCGTTTGTGCGTACCTTTGAAAAAACGAATTGCCATTGCCCTTTGGAAGCTTGCCACTGGCAGCGAGTACAGAAGTGTCAGCCAGCTTTTCGGGGTCGGCGTGAGCACTGTATTCAACTGTGTGCAGGACTTCTGCAACGCTGTAATAAAAGTTCTTCTGGCTGTACACGTTAAATTCCCAGATTCTACAAAGTTGAAGGAGATGGCAGATGTTTTCGAAAGTGGCTGGAATGTTCCTCAGTGTGTGGGTGCAATAGATGGAAGCCACATTCCAATAATAGCGCCTGAAGATTACCCTCGTGACTATTTTAACAGGAAGGGGTGGCATTCAATAATAATGCAAGCGGTAGTGGATGGCAAAGGGCTTTTCTGGGATTTGTGTGTTGGCTATCCTGGGAGCGTACATGATGCCAGCGTCCTAAAAGAGTCTCATTTGTGGAAGATGTTGAACGATGGACACCCGTTAAACCAAAGCAAAGTGCACATCTCTGGTTCTGATGTTGGATACTACTTGATTGGAGACTCAGCCTATCCCTTGCAAAAGTGGCTGATGAAACCATTTGCGGACACGAGCAGTCTAACCCCACAGCAGCAGAGGTTCAATCTCAGGCTGAGCAGTGCAAGGTCGGTTGTGGACTTGAGTTTTGGAAGGCTAAAGGCAAGGTGGAGGTGTCTCTTAAAGAGGAATGACTGTAAACTGGAGCTGATAAAGAAGATGGTTTTGACCTGCTGTGTGCTACACAATATCTGTGAGGAACGCGGAGACCGCTTCAGCGAAGACCTTTCGGCCATCCATGTGAACATGCAGCCTCCCGTTCAAGCATTAACAGAGCACGGACGACCAGAAGGGACGGATGTACAAGCGGCATTATTAGACTACTTCAACAGACAGGACAGTGAAATTATACAAGGAGCAGTTTAATTTGTATCactttttctattgttttattttttagatggTGTTTTTTTCCAAGAAATGTTCCACAATTGATGTATATAgatttattataaagtaattgcaataaaaaaaaaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68768 lncRNA downstream 810 18761584 ~ 18762435 (-) True G46432
TU68753 lncRNA downstream 42077 18656842 ~ 18721168 (-) True G46421
TU68764 lncRNA downstream 55675 18707047 ~ 18707570 (-) False LOC122347235
TU68733 lncRNA downstream 76421 18603991 ~ 18686824 (-) True G46412
XR_006251132.1 lncRNA downstream 119892 18642722 ~ 18643353 (-) True LOC122346470
TU68775 lncRNA upstream 92229 18857712 ~ 18858471 (-) True G46439
TU68781 lncRNA upstream 117369 18882852 ~ 18886400 (-) True G46444
TU68814 lncRNA upstream 204687 18970170 ~ 18972370 (-) True G46463
TU68844 lncRNA upstream 278133 19043616 ~ 19043869 (-) True G46476
TU68845 lncRNA upstream 279145 19044628 ~ 19048746 (-) False G46477
XM_043241381.1 mRNA downstream 19129 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 55649 18706623 ~ 18707596 (-) True LOC122347235
XM_043241259.1 mRNA downstream 57513 18702854 ~ 18705732 (-) True LOC122346546
XM_043242319.1 mRNA downstream 274371 18458127 ~ 18488874 (-) False gabra5
XM_043241306.1 mRNA upstream 220567 18986050 ~ 18988440 (-) True LOC122346582
XM_043241881.1 mRNA upstream 305922 19071405 ~ 19078891 (-) True cnga3a
XM_043242375.1 mRNA upstream 348195 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA upstream 348195 19113678 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA upstream 348195 19113678 ~ 19123970 (-) True hdac7b
TU68756 other downstream 45757 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 118111 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 989138 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 989138 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 1454767 17307815 ~ 17308478 (-) True G45910
TU68851 other upstream 289663 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 349578 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 787836 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 787836 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 900951 19666434 ~ 19666506 (-) True trnaf-gaa

Expression Profile