RNA id: XM_043242965.1


Basic Information

Item Value
RNA id XM_043242965.1
length 2234
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC122347583
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17993970 ~ 17996739 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGGTTGTTTTATGATTTGGGCTTAAGAATTTAGTCCAGTTTGGGGAAAGAGAAACAGCAGTAGTCTGGAAAAAAGGGCCCTTAAACGAGACCATGAAAAGCAACATTGTATATTTGTGGATTTGTGCTTTTGCAGTAATTCATGGACATCAAGAGACTTTACCACAACCCTCCATCAGTGATAAACTCCCATCATTGATAAAGATGAACAATGATTTTGCTTTTCAGCTGTACAAGAAGCTTGTAGAAACACCAGATTATCAGTTCAAGAATATCTTCTTCTCTCCCTTCAGTGTGTCTATGGCCCTTTCTGAGCTATCTTTAGGAGCTGGTGGTGAAACCGAAAAGCAGCTTCTCAGTGGCATCGGCCATAACAGCTCGGTCTTCAGCATTGAAGAAATGCACCAGATGTTCCACAGTCTTCTGGAAGAAATGGAGCAGAGTACAGGGGTGGACATTGACATTGGCAGTGCTTTATATGTAAGTGACAAAATTAAGCCCCTTCCTGAGTTTTTGAAGAAGATGAAGGAGTTTTACTACTCTGATGGATTTACTGTGGATTTCGGTGCCAAAGAAACACTGGATAAAATTAACACGTACGTGAAGGAAAAAACACATGGGAAAATAGACCAAGCTGTTGATCATCTGGAATCTAACACTTTCATGTTTCTTCtcacttacatttattttcaagGAAAATGGGACACGTCGTTTGATCCAAGCAAGACCCATGAAAGTAGATTTAATGTAGATGCTGAGACCACAGTTCCAATACAAATGATGCACCAGTACGCATCCCACAAAGTTTATTATGATGCCGAACTCACTTCTAAAGTCCTCTGTCTAGACTACAACGACTCTTTCTCCATGTTTCTGGTTGTCCCACATAATGACATATTCGTTGAACCTAAAACCATCAAAGATCTGGAGATGGCCATCTCTAGACAGCACATTGAGAAGTGGAGGACAGCTGCCAGAAAAAGGTTGGTttctttctatgTCCCCAAGCTCTCTCTCAAAACGTCATATCCCCTAAACGATATTTTGAAAGGACTGGGAATGGCTGATATGTTTACAGAAAAAGCCAACTTCACAGGAATTTCGGAGGAAATGATCTTCATTTCAAAGGCTGTGCATAAGGCCACTCTGGATATGGATGAGAAAGGAACCACCGCAGCAGCAGTGACGAGAGTTTCATCTGGGTTTTCCTACAACCCAATGTCGTCTTTGCGTTTTGACAGTCCATTCATGATCTTTATCATTGACCAAAAAAATGGCAACATCCTCTTCTTCGGAAAAGTTGTCAATCCAGTGGAAAAACTGTAATGTGACAATTAAGATCTCTTGACAACAGGTGGCCATGACAAACACTATTTTGCAGTCTCTTCAGTTTGTATGTGTTGATATATGACATACAAAACTGAGTTTAGTGACAGAAAGGCATTGCTAGATCTAATGAATGCAACTATGTACGTAACAACCCTGTTGAAAAACCCTATTAGTTTAAGCTGGTCCTAAGCAACTAGTTACTGCTCAGGGCCAGCTcataacctgaaaaaaaaaactgcatatgctATCCAGCTTAAACAAGCTTATGACCAACTAAGGACCAGCTTAACCAGTTGctatgctttaaaacatacctaaccagcatatgctgttttttctttagGAGTACACCTAACTGGAAAGAGAAAACTGGCAAAAACTGGCAACACTGGCCTTTGTCTTGAattattttcatacaaaaaaaacattcttttgaacaaacactttttttatctaACATGTCAGTAtgcacaaaaatactaaaaaaataaaaaagccattttaagaGTAGCATTTACATGGTGTCTTTTGGCAACTCAGTATCCTTATGCCAATTCAATAAAAAAGGCACTAATGTTAGATAATCACATAATTTTAACCCAAATCATGAtaactttaatataataaaataacttaaatataataaaacactatttatcacaataattatatttaatctctGATTTGTTTGAATATACTCCAATTTGTCTGATTTGTAAAATATAGTCCAATAATCTGCAGTTTTATTCACAACTACGATTCGCCTAAATTGCCCAATTGTGCATTCCAGAGTCATATAACAATCAATAGCTAAATACTTGTACAATTATACTCTGTAAGCTGGCATTTTGATATAGGAACCACCAATGAGCGATTGAATTAAAGTGATGCATGAACTGTTCA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68093 lncRNA downstream 171235 17822536 ~ 17822735 (-) True G46000
TU68086 lncRNA downstream 185855 17807621 ~ 17808115 (-) True G45993
TU67995 lncRNA downstream 475365 17514638 ~ 17518605 (-) True G45930
TU67974 lncRNA downstream 579831 17413038 ~ 17414139 (-) False brinp3a.2
TU67960 lncRNA downstream 747601 17243680 ~ 17246369 (-) False LOC122347244
XR_006251164.1 lncRNA upstream 43625 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA upstream 45908 18042647 ~ 18044630 (-) True LOC122346731
XR_006251165.1 lncRNA upstream 66042 18062781 ~ 18066949 (-) True LOC122346732
TU68243 lncRNA upstream 100329 18097068 ~ 18097490 (-) True G46074
TU68269 lncRNA upstream 120617 18117356 ~ 18117582 (-) True G46092
XM_043241931.1 mRNA downstream 219864 17743715 ~ 17774106 (-) False opa1
XM_043241930.1 mRNA downstream 219864 17743715 ~ 17774106 (-) False opa1
XM_043241932.1 mRNA downstream 219864 17743715 ~ 17774106 (-) False opa1
XM_043241929.1 mRNA downstream 219864 17743715 ~ 17774106 (-) False opa1
XM_043241928.1 mRNA downstream 219864 17743715 ~ 17774106 (-) False opa1
XM_043241575.1 mRNA upstream 18499 18015238 ~ 18024042 (-) True LOC122346727
XM_043241577.1 mRNA upstream 31315 18028054 ~ 18040353 (-) True LOC122346729
XM_043241576.1 mRNA upstream 48914 18045653 ~ 18060885 (-) True LOC122346728
XM_043241953.1 mRNA upstream 82895 18079634 ~ 18083673 (-) True nit2
XM_043241951.1 mRNA upstream 91321 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XR_006251188.1 other downstream 219863 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 219863 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 685492 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 806652 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1163762 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 647567 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 717435 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 1058407 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1118322 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1556580 19553319 ~ 19555931 (-) False tsfm

Expression Profile