RNA id: XM_043242976.1


Basic Information

Item Value
RNA id XM_043242976.1
length 7321
RNA type mRNA
GC content 0.44
exon number 1
gene id foxd3
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14805304 ~ 14812624 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAAGAGACGTGCAGGGGGGTAATTGAACGGACCGTTTTCtggcgagaaaaaaaaaaaaagcaagtacACTTGTTATCTTGTGAACTCTCAACATATAAGATAGGGATCTAGTGAACGTCAGCATGAAAGATGGAATTAACAAGAGATCTTTTTATTGTCCTGGAAGGTCATTAGGCTGCCAATTGGGTAATTATGGAAATGCTCTGAATGTTTTCCCCCTTCCGTTATAGGATCTGAGACCCTTCAATCAGCTCGTCTCGTGGGAAAGTTCAGCCATAACTGCAAGTGTACCAGCAAAATCAAATTAGCCAAAGATATTTCATTAGTATTTATAGCCGGAGGCATTTGTTGAAGAGAGAAGTTGTGAGACTCGAATGGAAGAATTATTAGCTGATGACAAGGGCCATAGCCCACCTAAGACATAAACTTGAGTGGACTTAATGAATTGAAGCCATTGATTGTATCGACTCTCTCTTTATTCGTGTTGGAGACACAGTGTTCGGTGAACATCATAATACACGACAACCATGCGGTTTGCAACCCATTTTAATAATTCGTCAATCTGGAAATGATACAATTCACGatgtcatcaaaataaaaaataaaaaatagccaTGTTTGTGAGAACGACATCAAGACGACATTCGTTTTAAGGAAATGTACCAAATTGAGCGCGTGTACATTTACAAACGAATGAACAggaatacattattttacaaaatacaaatttgactgaaaataaaagataaatccAAACCGGTGGAAAAGTGACGTCCTGCGGTGATGAGTTCATCgcacattttatttgacttcaATCTGAGTTAAACGGAATAGTGGCCGAATTAATGGCCTGATTGTAAACGGTTTACGGTATTCCGAATAAATAATGTGACGATTTGATCATGTTTACTAGAAATGGAGAAGGCGGTAGAAAGTGAGTGCAGCGATAACGTGTGACTTCGATGCAGCCGGTTGTGTCAAATAATCGCGAGATTATAAGAGCGCGGAGCAGTGAGTGCTGAAAGAGTCCCGTGTGGCAGCGCACTCAATAACTCGCTCGTTTCACCGCAGATTCGGACTGAATAACAAGCATTAAGGTAATTAACTCTACAGCTACAACGGGTAAAGTGAGTAAAGCGTCACTACTGGTAAACCTGACTGAAATCAGAGGTTAGGAAGATAACGTGTAGGCCTATAACAAATGCGTTTAACACGTatcctatataaataaatctgatcAAAGACCAGTTGTTTACACGGCCTATAAccttatattatatttcataattaatctTAGTAATTTAAATGTCTCGTATATGGGGATGAAACTCATTTTAAACCCTTTACGTTGACGTTAAACCCCTAGCTAGGCGTTATATCTACCCCATATAAAAAGATAGCGTCAGTGTATCCATGGCGACTGAGAACGCGTAAGGCGCATCCTGTTTAATGTTCCCTCAGCAGAACGCTTCTTATCAAAAGAATCTAGACGTGTATAAAAGAGATGCTGGATGAACTTGCATTACGCAGGAAGTTCGTGTTAGTAAGTTAAGACAAAACCCAAATAACACCCTCTCGTCGTGATAATGTGCTACTTCAGTCTTCATCTAAATAACAATTGAACGTACAAACCGAGTAACATCACACATGCTTAACTACGCGCTTTGGCATGTTAATCTGGCTGGAGGCGTCGTTTTTGCACCCGTCCTCGACATCGTGGACCACATACAACCACATCAAACATAAGGCAATATTAAAAGAGCATTTCGTAAAGTGAGATTAAATATATGCTACGTTCACAAAGGTTTCATTCTTGAATGCACAGCCAATGCTTGATTATTAAATGCTTCGTACCAATATGAAGCCACGAACTAGCAGAAATGTAAGGTTTTATTCCAGTTgggtcttttttttaacaattaattcatCGGTTAGGTTTGAGAAGATGAGTTAGCATTTTGTGGCAGTTACTTACGTGCAGGTTAATTCTGCTTCCAGCTATACGGAAAGAGAAAAAtcacagcacaaaaaaaaaacaagcattattCATTACAGGATACATTCATTGAGACATTTGACAGAGCTCTGTGCTTTGTGTgggaaatgcatttaaaagagaaaatgaaacattttgcatGACACAGTTCACACAGCAACTCTGTGTAAAATGCAAACAGATcgtgaatataaaataataacaataatcgcacgttcattttcaaaagcacAGCCCTCCTTTTTTATTCGGGGGTGATGTCTTAAATCAGGTATTcgtttattatttttccaaCACTGTTTTGATACCGTTGTCGTGCGCTATTTTGTATGGGCCTACCTGCGGAATTATGTTATGTTCAACCGAGTTTGCGGAGCGTAACGCTGATTTTCTGCTTTGGCTGTAATGGTACGAGCCTGCAGGATGATACTACAAAGGGGACTGTTAAAAATGAGCTGGATCATATTGTTTGACAGAAAGTTGCAGGTTGATAGAGTGGATTCTTCAAGAGGGTGAAAATGGTGAATTCAGAGAGAAAAACGGAGATCCTGCCTTCTGGTGGGTATAGCCTTGGGGAATCACGGTGTCGACCGTAGAAAATCCAATTAAggattgcatttaaatgaaaagtcattttttaaccAGAGTGTGACGTGGACACTTCCCTTTCTAGATGAGAGGAACGGTTTTCCCGCAAATGGCtcctttttattaaatctgacGTGCTGATAATGCGGAGTTGATGTAAAATAATTGGCACAATAACCGTAATTAAAAGCGCGCTAACAAAGCCATTCATTTATCACAGTTGCACGAGCTTGCCCCCCAACCCTGCTTACATaataaaaacgactcgtttctaCAAGACCGATTTCGCAAAAGATGCGACGCTTGCGAAATATATTCGATCGCAACGAAGGGCAGACTCTTTAATACCGATATAGAAATATGCATCACGGTTAACGGTTTGCTGAGGGGCTGTCGATTCGGATAAAGCACGACTCTAGTGCTGATGACAGACGtcttacacacaaaaaaaaaaaaaaaaaaaaaaaacaagaaaaaactaaaaggattaaaaacaatattaacgagaaattaataacatattgcGAAGGCCCATTCATTAACGTGTTGGGTGGCCTATCTGTTTTATCGAAGTCCGTGCAGCTTTAATATACCCTTCAAATGCAAAGCATCCTCCTATTCAAGTTCAGTTTTCATCTGGGTTGCATCCTTTCTTCTGCAAGACCCCCTCTTCCCCTGAATGGACACATTTCCCATTACGCCCTTCAATTTTCCCTTCTATCTCTTTTATTTCAGCGATTTAATTAGGCATAAATTCGATCCTGCTTTGCTATTTGTGAGCTATTTGTTTCTGACCTTGCTGGGTAATCACATTCAGCCACTGTATCCGCACCGTCACCTGCTATGCCTGCGTCCCCTAATAGGTTCATGCTGGAAAGAGTTAGCTTATTATTCTAAAAGGTTTTGTCGGGTTAAGCCGTGCATGTGTgcttaaatgtacatttcattAACAAACTGCGAAGGTATAAAGCcggatttatggagcttcaaaagaTCACAGAGAGGACGAATTTGATCTCATTTTGGGCGATATCACCCGCGATGTCTTTCAGCGCGCACTGACTCGAGATATATggtcttttacattttaagccCCTGACAAAACCCTCCATCATTCTGCAACACGCAGCGCCAAAACGCACGCGAATAACCCGCCTGCGCGCGtgcgtttgtatttataattaaacaacGGCACGACCTAAAGCAATAAACCAGCACACGTTTGGAGGCTGCGGAAATATCGTTCGAGTAGACTCCTATAACGCTCCTAAAGAATATCTACTGGAGTAACAAAGACGCGTAGAAATTATTAAACGAATGCGCGCGTTGGGCAGAAAATATTTTCGAAagtaaatatttactttagGCGGCGTTAAAGGCGCTTCGACTTCATCCTCTAAGTGGCCCGTATTGATAAACGGGACATCACACGGGGCCACAGTCTGCTTGAACTATTCAATACCATTAATAGCAACGTGGTTCAATTAATCTCATCCACGCAAAAACAGCTTCAAAGATGTAGCGCGAGCAAGCGTTCCTCGGAGAATTGTTAGGACGGTGAGCAGGCTAAAGGTAAAGGTCGAGGTGAAAGGTGGTGGCCTATTTGCAGATTAAATGTcatgcaacaaaaacaagcgCGCTGAAAATATTACGCAACCCCTATTTAATGAACTTCCTAAATATGCTTagcgccaaaaaaaaaaacagtatagaTTCGTGCCaaggtaataataaaataatgcatcattattaacaataattgaCTATTCGGTTTTAGCATTAAGCTAGAAATAAATTCGGCTATTTTGAAAGCAGCGCTGCAAGACCGGCACCGAAACAGGGAGACGAGCGATCCGCCGAAGAAATATCGAGCTTAATTTGCTTTCGCGCGTTTCTCCGCCACGAAACCGACGCAGCCTATTTTGTAAGCTCTAATAGAAAGGTGCTGAGAATAATTGATCCGAGCGTCAATTACACCagcctttattttcattacagCCGGGCAGATATTCCTAGCCGTGGATCGATAGTACGTTATATTACTTGTggttaaataagatttttttttttcctgtgcatCGACAAAAACGAGACAATCGCATCAGCGTTTAATCTCTCGAATATACAAGAAACGAGAGCATCCGAGCACAAATAGAACGGCATTAAAGCTTGCGGTTCCCGTGAAGCGTTTTCTCACACGATCCAGGAAACGTTAGGAGTTTACATATTCCCTCTccgctttctttttcttgggAATATCCCACATGCGTCGCTCACCTGCGCGCGTGTGAATGGCTCGTACGCATTCACCCGCGCGCTCATTTCCTACTTAATTCATATGTTAACGCGAGCAATGATGAGGGTCGTTAGCACCTCTGCAAAGATCTTTATTTAGAGATTTCCATTGTTTTTGTACTTATTTCACACGTAACGAAATCGGTCCCGCTACGACTACAGAAACGGGCTACCAAATcgcgtttttttttgtttgttttttctccccACTCAGTTCTCAATACCAAACGGGTTTCGTCGTCTTCGCCCGGTCATGCAGCATTCGAGCACACAATACAAATGACAAGAGATTCGTTTAACTTAGCTGTAGACGTTTTCGTTCAGCAGCTTTCAATATAATTGGCCTAAGAAAAGTTAAGTTTGCGTTTGGCGCGGGCGAGTGAACGCGCGTCAGCTCTGGAGATGATTTCAATCAGGCGGGCCGATTTTCTCCCCTCCGCCGCCGCTAAATGGTCTATGACGGACGAACAGAGGCGATGTTACTGTTGTTCCCTTTGTTGACAAATCCATGAAACAACTTCAGCTCGGCGGTATAACAGCGCGACCTCTGACGTCGGCGGGTCACGTGACGCGGCTGATAGTATATCTTTAAGTGAAAAGTAATCTATCAGACAGTCCTTAAAGCCCGCTTTTCAAAGCACGTGTCATCTCGACTCCTCGGTCCAAAAGCGCGCTTGAGTTTCGAGGAAATACAGCGGGAAGGAGGCGAGGTGCGAAGCAGCCTTTGGAGACTGGAGAAATATTTTGTGAAGTTGAAGTTTTCCTGGCAGGCCGGGACCGACCTGCATTTATAGCCACCGGTCGTCATCTGATCTGGCCGCTGCTCTTACCTTGGTTTGCTCCAGCGGTAAAGTGAGCGGTGATGACCCTGTCTGGAGGCACCAGCGCCAGCAACATGTCCGGTCAGACCGTGCTCACAGCTGACGATGTGGATATCGACGTGGTCGGGGAGGGCGACGAGGGGATGGAGCGGGACAGCGACTGCGAGAGCCAGTGCATGCAGGACCGGGGAGATGAGGTGGAGGAGATCGAGGTGAAGGAGCACAGCGACAGCCCGTGCGAGAGCGCCGGCGAGGGGGAGTCAAAGGGGGACGCTCAGGAGAGCTCCACCGGCTCCATGCAAAGCAAGCCCAAGAACAGCCTGGTGAAGCCGCCCTACTCCTACATCGCCCTCATCACCATGGCCATCCTCCAGAGCCCGCAGAAGAAGCTGACTCTCAGCGGAATCTGCGAGTTCATCAGCAACCGCTTCCCGTACTACCGAGAGAAGTTCCCGGCCTGGCAAAACTCCATTCGCCACAACTTGTCCCTCAACGACTGCTTTGTCAAGATCCCACGGGAACCGGGCAACCCGGGCAAGGGCAACTACTGGACCCTCGACCCCCAGTCGGAAGATATGTTCGACAACGGCAGCTTTCTGAGGAGGAGGAAACGCTTCAAGAGACACCAGCCGGACATTCTCAGGGACCAGACCGCCCTCATGATGCAGAGCTTTGGGGCGTACAGCATTGGGAATCCCTACGGACGCCACTACGGAATTCACCCTGCCGCTTACACGCACCCCGCCGCCGCTTTGCAGTACCCGTACATTCCCCCGGTGGGTCCGATGCTGCCTCCCGCGGTGCCTCTCCTGCCCTCCGCGGAACTGAACAGAAAAGCATTTAACTCTCAACTGAGCCCGAGTCTCCAGCTGCAGCTGAACAGCCTGAGCACGGCGTCAATCATCAAATCCGAGCCGTCCAGTCGGCCGTCGTTCAGCATAGAGAACATTATCGGGGTCTCCAGTAGCTCCACGAGCGCGCAGACTTTCCTGCGGCCGCCCGTGACGGTGCAGTCCGCCTTACTGAGCGCGCAGTCCCTGTCCCTGTCCCGGACGTCAGCCGCCATCGCGCCCATTCTCAGCGTCCCGTCAAATATCATCTCCGGACAATTTTTACCGACAGCGTCCACGGCGGCGGTGTCTAAATGGCCTTCTCAATGAtaatcaaactattttttttagacatatatattttaaagacgATACAGCACGAACTATAGGCAGCACTGGACGATCCGTCCGCCCCAATGTAGCCATGTAaagacttttgaaaaaaaaaaaaaagaaaattcataaTCAAAAAGGAATGCTTTCAGTACAGgtaatgtttgtaaatatttgtacaaagaaattaatttacatgtttttctttcctgtttCATTTCGTTGTTTAAACTGATAGCTGAGTGAGCCTTACTTTCCcgtaatattttgtttttattctcaaAGAATTGATTTCgagaagaatgtttttttcccccctttgttttccaatatgaaatattaaactgtTCTTATTGAAAGACTGAAGAAGtatgtttataaaatttaaatatatgtattctaTGTAGCTATATTGTGTTGTAAATCAACttcatttgttaataaatatgaaaacaa

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0048484 enteric nervous system development biological_process
GO:0048485 sympathetic nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050935 iridophore differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001822 kidney development biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0007389 pattern specification process biological_process
GO:0048937 lateral line nerve glial cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09397 FOXD; forkhead box protein D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251130.1 lncRNA downstream 149273 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 149273 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 311282 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 526278 14263867 ~ 14279026 (-) False LOC122346673
TU67118 lncRNA upstream 92878 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 290066 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 372528 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 372528 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 372528 15185152 ~ 15221025 (-) False G45543
XM_043242738.1 mRNA downstream 3450 14789676 ~ 14801854 (-) True alg6
XM_043242739.1 mRNA downstream 3481 14789676 ~ 14801823 (-) False alg6
XM_043242114.1 mRNA downstream 24575 14770982 ~ 14780729 (-) True efcab7
XM_043242115.1 mRNA downstream 35407 14762711 ~ 14769897 (-) True pgm1
XM_043242953.1 mRNA downstream 47352 14657884 ~ 14757952 (-) True ror1
XM_043242692.1 mRNA upstream 94743 14907367 ~ 14914995 (-) True atg4c
XM_043241194.1 mRNA upstream 111515 14924139 ~ 14929125 (-) True angptl3
XM_043241192.1 mRNA upstream 144405 14957029 ~ 14962572 (-) False usp1
XM_043241191.1 mRNA upstream 144405 14957029 ~ 14962572 (-) True usp1
XM_043241229.1 mRNA upstream 269594 15082218 ~ 15086566 (-) True mafaa
TU66983 other downstream 612138 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1124030 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1337365 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1337739 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1338078 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 516343 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 791286 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1246344 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1247269 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1548576 16361200 ~ 16364020 (-) False fam183a

Expression Profile