RNA id: XM_043242999.1


Basic Information

Item Value
RNA id XM_043242999.1
length 4175
RNA type mRNA
GC content 0.48
exon number 22
gene id inpp4ab
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 6526834 ~ 6562790 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGGGCGGGGCCACACTATGCAGCAGCGCAGAGAAGAGCGAGAGGCAGCGCGCTGGAATTTGGCAACAGAGCTTCGCATGCATCTCAACTCTTCCGATGGCAACATGGATTGACACAGCACCCGCCGAGATataaCACAGGAGGAAACGGCCACACAGGAGTGTGTCTGGCTGTGTGTCGGTTTCCACCACTCCTGTTATTGaacttcaacacacacacaaacatcctGCCAAAATGTCACGGAGGGAACGGCCATGGTCGGTGTACAGGTCAAACACTTTTGAGCTTTCCTCTGAGATGCTTGGACTAGCATTGGAAGGAAACAGTCAAGATCCAGATGAGCCAGTACTAGAGTTCAGTCTTGTCTGTAGTGAGCTGACCACACCGTCTTTGGACCGAAAACCCAATAGTTTTGTTGCTGTGAGCTGTACCACACCCCCTCAGGCTTTCTGGACCAAACATGCACAGACAGAGATCATTGAGGGTACAAGTAATCCCATGTTTCTCAGCAGTGTGGCTTTTTTCCAAGACTCCCACATTAACCAGCACACACAGGTCAAGCTCTCCGTGTATGATGTAAAAGATCGCTCACAAGGAACGaTGTACCTTCTGGGCTCAGCGATGTTTCCAGTAAAGGATCTTCTGCTGGAAAAGAACCACAGACTAAACTTGCCTCTCAGGTCAGCAGAAAACAAGCATGTGGGTAGTATTACAGTCATTGCTTGGCAGCTagaggagaagagagaacaGCATACACCAATCAAACAACTACAAGACACCATCAATGGCAGGACTGTCCTCCCCGTGGATGAGAGTCTGACAGAATCTGTGGGTGTCCGAGCGAAATACGCCTCTCTGTGGAAAGACTCTTTTCTACGATCTGTGTTTGGTGGCACCATGTCCCGTATGTACCGTTTTCCAACCACTGATGGGAATCATTTACGTATCCTGGAACAGATGGCTGAGAGTGTCCTGTCACTTAACATCCCACGACAGTTCGTCAAACTCTTACTGGAAGAGGATTCCTCCAGAGTATCTGAGCTGGAGGAGTTAGGGGAGTTATCACCATGTTGGGAGAATCTTAGGCGGCAAATCGTGACGCAGTACCAGAGCATCCTTCAGACCTATCAGGATACACTCACAGACCTGCACGACTACAAAGGTCCATCATTTAAAGCCAGTAATCTGAAAGCAGAGAGGAAATTGGAATTCATGCCTACCAACCTTCATGTGCAGAGAATGAGGGTTCAGGATGAGTCTGGCTGTGATCACACCTATGATGTGGTAACGATCGGGGCCCCAGCAGCTCACTGCCAGGGTTTCAAACACGGTGGTTTGCGGAAACTATTGCAGAAATTTGAGGAGGCAAAAAAAGTCAGCAGTGCTCTGTCCAGCTCCCAGTCCATCGTCTACATCCCTCAGGATATTATCCGTGCCAAAGAGATCATCTCCCATATCAACACGCTCAAGACTCAGGTCAGCTACTATGCTGAGCGCCTGTCCCGCGCCGCTAAAGAACGCTCCGCTAACGGCATGGAGAGAACCCTGGCCATTCTAGCGGATAAGACACGGCAGCTGGTGATGGTGTGTGACTGTAAACTGCTGGCATCTGCAGTGCAGGCCCTGAACGCAGCTAGACCTGAGTACATCGCCTCTAAAAACTCACCATCTGCTGACTCGGAGCAGGTGGTGCTGAGGAATGATCAGGACACACTACTAGCCAAATGGAGTGGCAGAAACAGTCGTTCATCCCTCCAAGTTGATTGGCATGAGGAAGAGTGGGAAAAGGTGTGGGGGAATGTTGACAAAAGTCTGGAGTGTATCATCCAGCGAGTGGACAAACTTCTGCAGAGAGACCGTCtgcacagcagcagcagtgagGACATGTTCCAGGCTGACCAGCAAAGTGGCACCAGTAAGAAAGGTGAGTGGAGCGAGGCTCTGTATCCCCTCTTGACGACCCTAACAGAGTGTGTGGCCATGATGAGCGACAAAGCCAAGAAGTCAATGGTTTTCTTGCTCATGCAAGACAGCGCACCCACCATCACAATGGACCTCAATCTGCAGTACCGCCGAGACGTGGTCTTCTGCCAGACGCTCACCGCACTAATTTGTGGCTTCATCATAAAACTGAGAAACTGTCTCCGTGACGACGGTTTCCTGAGACAGCTTTACACCATCGGTCTGCTCGCTCAGTTCGAGTGCCTATTAAGTACCTACGGTGAGGAGTTAGCCATGTTAGAGGACATGAGCATAGGAATAATGGATCTTCGAAACGTGACGTTCAAGGTGACGCAGGCCATCTCTACCTCTTCCCCCGACATGCTGCCAGTGATCACCGGAAATAGAGACGGGTTCAACGTTCGCATCCCTCTCCCGGGAAGCATGTTTGATGCGTTGCCGAGGGAGATCCAGAACGGCATGCTGCTGCGGGTACAGCCGGTGCTGTTCAACGTGGGCATCAACGAGCAGCAAACGCTCGCCGAGAAGTTTGGAGACACGTCGCTTCAGGAGCTCATCAACGTGGAGAGCCTGGCACGTCTCAGCTCTTACTACCAgcagtttaaagaggttttacCTGACGACTGTCTTCCTCGCTCTCGTAGTCAGACGTGTCTCCCGGAGCTGTTGCGGTTCCTTGGTCAAAATGTTCACgctaggaaaaataaaaatgtagacaTTTTGTGGCAGGCCGCAGAGATTTGCCGGCGACTAAATGGAGTACGTTTTACCAGCTGTAAAAGCGCCAAGGACCGAACCGCTATGTCAGTGACTTTGGAGCAGTGCCTGATCCTGCAGCACGAGCATGGCATGGCTCCGCAGGTCTTCACCCAGGCCCTCGACTGCATGCGCAGTGAGGGCTGCCGCCGCGAGAATACCACGAAGAACGTTGGATGTCGCAAGTATGCCTTTAACTGTCTGCAGCTGAAGGCCTTTCCTAAACATTACAGACCTCCCGATGGCACTTTCGGAAAAGTGGATACTTGACGAGACGACTCTCGTCTCGCTGTAATGCAGCAGTATCGTTAATTTATGATGTGACGCGCGTCATGCACATTAGAAACTCCAGCTTAGCTGCAGTAAATCCGGCTCAATGCATAGGCTGTTTCAATTTGCACTGATAGTTAccgaacatttacatttcaagtGAGTTTGAAGTGAACTGCATTGATTTGTATTCGTAGCAAAAGACTACATACTTGATCGTTTCTTTTTCGTAGGCTGAGCATCAccgcacatacacacaatgcTGTATTATGGCTCTCTGTAGTGCACGGTGAAGGGTGTAGTGATTTATATCAGAATCCAGGCCCTTTATAATGCATAGACGTTTATGCTGTATTCATGTTGTATCCTTGATTATCAATAGCAAACTGTAGTGTGTTTAGTTTAAGCAACACCTACTTCAGCATTACAGTAATCAATGCCATGGCTTAGCGTGGTCACATGACTCTTCTTACTTATTCCCCgccgtgtgtgtgcgtgtgtacatTGAGGCCAGCAGAATAACTGTTGGGAAACAAAccaggcctttttttttttttttaggtttaattcattttctttttttaaacctcaTACATTCAGACTGATCATGCATGGTCCATCCTCtcagttgcttttatttttgaggTGGTCCTTTATGAAAACAATGTCCTCTTCGAGTAAAAAGAATGCACTTCTGGCACGTTTCTTCTGTGGACCGGCGATGTGAGATCAGTGTATCACTGTGTTCAGCTGGCAGCGATGACTcgtagatgatgctgttgttttgtgctGTACTCGTTTTAATAAAAAGGTACGTTCAGAAATGGAATATCGATACGTGGAGACGGTACAATACAGTGCTAAGCACTTGTGAAAATGACTGATGCGTGAATCTGTTACAGTTGTGCAAACGTTATTTTGTCGTGCATACCACTGTCGTCATTTCTCGTTTCCTGACACCGATGTTGTTTCAATTATTGTACGTTTATACACTGTTATTTAAGAGAGATATGCTCACAAATTTTTTGGAGTGGtcttgatttgtatttatttctttttatggtAATGACCTTATATCTTTTATGATGCCCTCTTAGATATATTACGTCTGTCTAGAACAGAGTTCTGCTGTATTAATATGCCGTCATCAATATCTGATGCCATTAAAGAGAGAATATAATACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63996 lncRNA downstream 4569 6041876 ~ 6522265 (-) False cacnb4b
TU63963 lncRNA downstream 43441 5995956 ~ 6483393 (-) True G43161
TU63978 lncRNA downstream 503324 6018440 ~ 6023510 (-) True G43173
TU63979 lncRNA downstream 503324 6018440 ~ 6023510 (-) False G43173
TU63938 lncRNA downstream 565149 5958793 ~ 5961685 (-) True desmb
TU64097 lncRNA upstream 241268 6804058 ~ 6827728 (-) False G43248
TU64100 lncRNA upstream 252470 6815260 ~ 6823021 (-) True G43251
TU64182 lncRNA upstream 545386 7108176 ~ 7112750 (-) False agap1
TU64428 lncRNA upstream 759099 7321889 ~ 7322842 (-) False nomo
TU64427 lncRNA upstream 761980 7324770 ~ 7329008 (-) False nomo
XM_043243005.1 mRNA downstream 1884 6509492 ~ 6524950 (-) False cacnb4b
XM_043243006.1 mRNA downstream 1886 6509492 ~ 6524948 (-) False cacnb4b
XM_043243008.1 mRNA downstream 4595 6509492 ~ 6522239 (-) True cacnb4b
XM_043243004.1 mRNA downstream 28618 6491782 ~ 6498216 (-) False LOC122347602
XM_043243001.1 mRNA downstream 28618 6491782 ~ 6498216 (-) True LOC122347602
XM_043243000.1 mRNA upstream 291550 6854340 ~ 6867062 (-) True tgfbrap1
XM_043243018.1 mRNA upstream 305154 6867944 ~ 6873860 (-) True fhl2b
XM_043243011.1 mRNA upstream 393342 6956132 ~ 6971613 (-) False st6gal2b
XM_043243010.1 mRNA upstream 393342 6956132 ~ 6971612 (-) True st6gal2b
XM_043243009.1 mRNA upstream 393342 6956132 ~ 6971610 (-) False st6gal2b
TU64004 other downstream 225697 6273323 ~ 6301137 (-) True G43180
TU64005 other downstream 225697 6273323 ~ 6301137 (-) False G43180
TU63795 other downstream 790214 5731218 ~ 5736620 (-) False mylkb
XR_006251223.1 other downstream 827184 5691481 ~ 5699650 (-) True arl6ip6
XR_006251179.1 other downstream 886909 5622686 ~ 5639925 (-) False adam23a
TU64096 other upstream 256569 6819359 ~ 6827728 (-) False G43248
TU64095 other upstream 261450 6824240 ~ 6827728 (-) True G43248
TU64107 other upstream 438325 7001115 ~ 7027427 (-) False trim63a
TU64411 other upstream 724500 7287290 ~ 7287927 (-) False LOC122346787
TU64423 other upstream 1017105 7579895 ~ 7586367 (-) True G43463

Expression Profile