RNA id: XM_043243000.1


Basic Information

Item Value
RNA id XM_043243000.1
length 4392
RNA type mRNA
GC content 0.48
exon number 12
gene id tgfbrap1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 6854340 ~ 6867062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAGAAACAGGAAGCGTTACagcagggagagagagggaggtggAGTGAGTGGGCGCTTGAATGAAACGGGCAGGCCGTGAAAACGCTACAATCTCTCAAATCAGGACCGCGCTGGCCACGGCTGGGatgTGGGTGGCATCATGAGCGTGAAAGCTTTTGAGCTGGTTCCCGCCGTGGAGCGGGAGCAAGTGATGGGCGAAAAGGTGCGGATAAACATCGAATGCATCGAGTGCTGCGGCAAACACCTGTACCTTGGTACCAACGACTGCTTCATCCATCACTTCCTGCTGGAGGAGCGCACTACGGCCAAAGGTAAACTGGCCTACAACGCCCAGAAGCTCCTCCACAAATACCTGGGCTTGAAGAAGCCCGTGGCGGAGCTGAAAGCTGCTTCCGCGCTGGAGCGTCTAATCGTGCTCTGCGACGCCACCATCAGCGTTGTGGACATGGTCACTCTGGAGCCCGTGCCTACCGGGGGCGCAAAGCTCAAAGGTGTGACTGCGTTTTGTATCAACGAGAACCCAGTCACGGGGGACGCGTTCTGTGTGGAAATGGCAGTAGTTTCGGCACGCAGGCGGGCCGTCCAAATATGCACGGTCCACGAGGACAGAGTGCAGATGTTAAAGGAAGTGACCACGCCGGAGCAGCCCTGTGCCCTCAGCCTGGACGGATACAATATCTGTCTAGCCCTGTCCACGCAGTACATGATTCTCAACTACAGCACGGGAGCCTCTCAGGACCTGTTCCCTTACGACTGTGAAGAAAGGAAACCCATCGTGAAGAGGATCGGCCGGGAAGAGTTTCTCCTGGCTGCTCCGGGCGGGCTCGGGATGTTTGCGAACGCGGAGGGCATCTCCCAGCGTGCTCCGGTGAGCTGGTCGGAGAGCGTGATTGCGGCGGCGGTGTGTTTCCCGTATGTGGTCGCTTTGGATGAAGGCTTCGTGACGGTTCACAGCATGTTGGACCAGCAGCTCAAACAGACTCTGTCGTTCAGGGATGGACACCTTTTACAGGATTTTGAAGGTAAGGTAGTGCTGGCCTCTTCAAAAGCGGTGTATATTCTGGTTCCTCTCCCTCTGGAGCGTCAGATTCAAGACCTGCTGGCAAGCCATCGAGTCGAAGAGGCCTTGACCCTCACCGAGGCGGCGCAGAGAAACATTCCCAAAGAAAAATATCAGATATTGCACAAAAGAATTCTCCAACAAGCAGGATTCATCCAATTTGGCCAGCTTCAGTTTTTAGAAGCAAAAGAGCATTTTAGGAAAGGACAGCTGGATGTACGGGAGCTGATCTCTCTTTATCCGCTGCTCCTTCCTGCCTCTTCTTCTTTCACACGTTGCCATCCTCCACTTCACGAATTTGCTGACTTGAACCACCTGACACAAGGAGACCAGGAGAAGGTACAGCGCTTTAAACGTTTCCTCATTAGCTACCTGCACGAGGTGCGTAGCAGCGACAGCGCTAACGGTTTCCGCGAAGATGTAGATACCGCACTGCTGAAGCTCTACGCAGAGATTGGCCACGAGAGTCTCCTGGACTTGCTGGCCTCCGATAATGCCTGCGTCCTGACAGACAGCGCCCCCTGGCTGGAAAAGCATCACAAGTATTTTGCTCTAGGGCTTCTATATCACTACAATGGTCAAGATTCTGCTGCTTTACAGATGTGGGTGAAGATCGTCAATGGCGATCTCCAGGACTCAACGCGGCCGGATCTGTTTGAATATGTTGTAGATTTTCTCAGTTTTTGCCCCAGCCTTGATCTGGTGTGGCGGCATGCAGACTGGGCGCTACAGAAGGACCAgaagATCGGCGTGCAGATCTTCACCAAACGGTTTACCTCAGAGGACAAGACGAGTCCGTTAAACCCAGACGACGTGATCCCGTATTTGCAGAAGCACAGTCAAGCACTTCTGTTCTACCTGGAACACCTTGTTCTGGAGAATAGACTGCAGAAAGAGAAGTATCACACGCATCTAGCTGTGTTGTATGCAGACAGAGTCCTGGGCCTGATCTCACGGCCAACATCCACCGATGACCAGCTGTCTGCTGCCCGCCAGAAACTACAACGGTTACTCAAAGAGTCTAATCTGTACAGGGTCCAGTTACTACTAGGTAAAATTCAGGACTCCGAGCTGCTGCTACTTGAGCGAGCTACACTACATGGGAAGATGGAGGAGCATGACAAGGCCTTGCACATTCTAGTGCACCAGCTCAAAGACTCAGCCGCAGCTGAAGAATACTGCTCTTGGGCCTCGGCGTCTCGTGACCAGTCCTACCGCCAGAACCTTTTCCACCAACTCTTGAGTGTTTACTTGGACCCTGATGTGCCGGGAGGGGCGCAAACAGTAGCTGCTGTTGACTTGCTTAACCAGAACGCTGATGTTTTTGATGCAGTGCGTGTGTTAAAGCTCCTCCCAGAGGAGTGGTCTCTGCCGTTACTCCGTCCTTTCCTGTGCGGCGCTCTGAGGGCGAGCGTGCATGCAAGGTGCACCTCCCAGGTTGCAGTGGGGCTGGCCAGAGCGCAAAATCTCCAGCTTCAGCACGACAGGCTGAAGTATCGAGGCGGTCCAATATTAGTGTCCGAAAAGAAAGGATGCCAGCTGTGCCACAATACCTTCAGCGAGCCAGACTGCGCCTGCTTGCCCGGCGGAACACCTGTCCACATTCACTGTGTCGCCAAGAAAGCCCTGAACTTACCGGTAGAGCGACAACACGAAAAAGCCCACCGCAGCAACCACACATGAAGCTGACGAGTCCCGTGGGGCAGTGGACACACACGAAGGCGTCACACGTGTACCGCACACACAGGGAGAAGCAGGCCCACTCCAGAGCACTCGCTGCGACCAGGACCTGCAAATGAGTGTGTGGATGTCtgaaatgctatttattccATAATCCCtctgcgtgcacacacacacacacacacacacacacaacagtgaCAATGAATATGAGAATATTTTAATGAACGTCAAACAAAAACCTGACATTGTCTCTTGGTGGATCTTTTTAGCCTCGCCTTATGATGACTGGTCCGGTGGCTatctttgctttttaaatggaTGGTGTTCATAATAACTATCGTTTGCAAACTGCTTGGGGTCTGGATACTAGTGTCTTCTTGGCTGCCTGGTCTCGGTGAGCAGAATTATCAAAACTGAGTGTATGTGATTTAAGCTGGTCAATAgttttcattaaacaaaacaccAAAGTTACTCGCTCTGTTCTCAGAGAGTGACAAGTTATAGCCttaagtgatttatttaatataaggAGCAATGCTCAAGAAgtacattattttcataattcgGGGTCATAGTAGCTATTTTAAACCGATTTAAAGGGAAGATTTTCCATGTCCGTTTATAGTCTGAACTGGAAAAACTTCAAAGTTACGTCATAGTGTTACGTAAGATTCTGATTAATGagcacaaagaaagatattgtGTGTCTCGCTCCCTCCTTTCCACATCAGAAGGAAGTCAAGTTTAAGTGATGTTTAGTCGAATTGTAGCCATATCAAACCAACCCGATGGACTCAGGCTAAGCTGTTTCTCTACGTTGTAATTAAATGCTAATGTGCATATATTACATCCAACTGTTTGTTTTCTCATATGCATGTGTGGTGATACGGACATGAATCTTCATGTCTTAAGAATGCTAAGCTGTGATTGTAATGATCAAAAAATGTTGACATGCTAAATTACATGTGATGTTTAGGGACGCACGGCGGCTAACAGCTGCGCGAGGTTTTTGCCTGAGAAAGATCTATAACCTCATAACCGAATATCTATTTGTCTTTAAGTGGAGTAATTTAAGAGTGAAAGATGGGGGGAAAGCACATAATAAACACTGCCTATTTAATAAATGACCTCGGCTATGACAAGGGAAAGGTGACTATTTGTCTTGAGATATTTTTCAAGGAACGTTTTAAAGGAAGTCATGCTTCTAACTGACTGGAAGGATGATGgtaaattctattaaaatgtaaacttgtCCCACCGTTAAATAGATAAATGACTTTAGGTATCGTACACAATGCCTGTGTAGTAAAGTGTATGTGAGCTACTGGGTCTTGGTTTTGATTTGCTGATGCAATTTTCCTGAAACAAAGATCCATTCGTCACGTGTGCAACCAAACGTTCTCCTTTACTGTCGAAAGAAGAGagactaaacttttttttttttcagcttgagCAGTAATAAATGGAAATCCTTCGTCGCTACATCTCTTTATATCcacttaaaagtattttatacaTAAACTATACATAGATACTGGTGTGTACATACTGTATTATTAACTGTTTGTTGCTTTGTAAATCGATGCCAGTGTGGGTGGAATGTACAGAATGTAAAGACGtccattttaataaacaaaactatgCCTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20177 VPS3, TGFBRAP1; vacuolar protein sorting-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64097 lncRNA downstream 26612 6804058 ~ 6827728 (-) False G43248
TU64100 lncRNA downstream 31319 6815260 ~ 6823021 (-) True G43251
TU63996 lncRNA downstream 332075 6041876 ~ 6522265 (-) False cacnb4b
TU63963 lncRNA downstream 370947 5995956 ~ 6483393 (-) True G43161
TU63978 lncRNA downstream 830830 6018440 ~ 6023510 (-) True G43173
TU64182 lncRNA upstream 241114 7108176 ~ 7112750 (-) False agap1
TU64428 lncRNA upstream 454827 7321889 ~ 7322842 (-) False nomo
TU64427 lncRNA upstream 457708 7324770 ~ 7329008 (-) False nomo
TU64450 lncRNA upstream 562716 7429778 ~ 7430446 (-) True G43472
TU64459 lncRNA upstream 594129 7461191 ~ 7498435 (-) True G43478
XM_043242999.1 mRNA downstream 291550 6526834 ~ 6562790 (-) False inpp4ab
XM_043242995.1 mRNA downstream 291550 6526834 ~ 6562790 (-) False inpp4ab
XM_043242998.1 mRNA downstream 291550 6526834 ~ 6562790 (-) False inpp4ab
XM_043242994.1 mRNA downstream 291550 6526834 ~ 6562790 (-) True inpp4ab
XM_043242991.1 mRNA downstream 291550 6531856 ~ 6562790 (-) False inpp4ab
XM_043243018.1 mRNA upstream 882 6867944 ~ 6873860 (-) True fhl2b
XM_043243011.1 mRNA upstream 89070 6956132 ~ 6971613 (-) False st6gal2b
XM_043243010.1 mRNA upstream 89070 6956132 ~ 6971612 (-) True st6gal2b
XM_043243009.1 mRNA upstream 89070 6956132 ~ 6971610 (-) False st6gal2b
XM_043242221.1 mRNA upstream 116183 6983245 ~ 7010491 (-) False lrrfip1b
TU64096 other downstream 26612 6819359 ~ 6827728 (-) False G43248
TU64095 other downstream 26612 6824240 ~ 6827728 (-) True G43248
TU64004 other downstream 553203 6273323 ~ 6301137 (-) True G43180
TU64005 other downstream 553203 6273323 ~ 6301137 (-) False G43180
TU63795 other downstream 1117720 5731218 ~ 5736620 (-) False mylkb
TU64107 other upstream 134053 7001115 ~ 7027427 (-) False trim63a
TU64411 other upstream 420228 7287290 ~ 7287927 (-) False LOC122346787
TU64423 other upstream 712833 7579895 ~ 7586367 (-) True G43463
TU64424 other upstream 712833 7579895 ~ 7583120 (-) False G43463
TU64425 other upstream 712833 7579895 ~ 7586367 (-) False G43463

Expression Profile