RNA id: XR_006251169.1


Basic Information

Item Value
RNA id XR_006251169.1
length 357
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122346791
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20245708 ~ 20247348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCATTCCATATGTCCTGTACCTGCTCACTTGTGGTATCCCACTTTTTGTGCTCGAGACGTCTTTGGGTCAGTACACCAGTCAGGGAGGCATCACATGTTGGAGAAAGATCTGTCCTCTTTTTGAAGGAATGGGTTATGCCAGTCAAATTATTATTGTCTATGGCTCAATTACCTACATCATCATCATAGTCTGGGCCTTCCTGTACCTTTTCTCAGCCTTCAGTGTGGAACTGCCCTGGGCCAGCTGCAGCAATCTGTGGAACACAGATGCTTGTATAGTGCTTAGTGTGAAGAATTCTAGCTCAGGGTGGACGTCTCCTCTCAACGCTTCTTCCTCTGTGATGGAATTCTGGCG

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251237.1 lncRNA downstream 5272 20239802 ~ 20240436 (-) True LOC122347561
TU69407 lncRNA downstream 71417 20173538 ~ 20174291 (-) True G46842
TU69403 lncRNA downstream 92921 20149547 ~ 20152787 (-) True G46838
TU69397 lncRNA downstream 115869 20127948 ~ 20129839 (-) True G46836
TU69354 lncRNA downstream 130449 20054866 ~ 20115259 (-) True G46816
TU69469 lncRNA upstream 31943 20279291 ~ 20399625 (-) True G46870
TU69479 lncRNA upstream 39067 20286415 ~ 20287172 (-) True G46872
TU69482 lncRNA upstream 80736 20328084 ~ 20378235 (-) True G46875
TU69485 lncRNA upstream 84064 20331412 ~ 20346745 (-) False G46877
TU69489 lncRNA upstream 92692 20340040 ~ 20389396 (-) True G46879
XM_043242486.1 mRNA downstream 7048 20237274 ~ 20238660 (-) True LOC122347299
XM_043241466.1 mRNA downstream 120447 20116875 ~ 20125261 (-) True slc6a22.1
XM_043242173.1 mRNA downstream 143249 20096024 ~ 20102459 (-) False srsf3a
XM_043242618.1 mRNA upstream 176363 20423711 ~ 20431177 (-) True hemk1
XM_043242842.1 mRNA upstream 535096 20782444 ~ 20786555 (-) True cav3
XM_043241340.1 mRNA upstream 547898 20795246 ~ 20799151 (-) True gpr61l
XM_043242971.1 mRNA upstream 552746 20800094 ~ 20805651 (-) True parp3
XM_043242943.1 mRNA upstream 559415 20806763 ~ 20841391 (-) False grm2a
TU69405 other downstream 79429 20161440 ~ 20166279 (-) True G46840
XR_006251194.1 other downstream 143250 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 398310 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 579202 19666434 ~ 19666506 (-) True trnaf-gaa
TU68987 other downstream 689777 19553319 ~ 19555931 (-) False tsfm
TU69571 other upstream 281831 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2492624 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2492624 22739972 ~ 22750947 (-) False tardbpb
XR_006251208.1 other upstream 2492624 22739972 ~ 22750947 (-) False tardbpb
XR_006251206.1 other upstream 2492624 22739972 ~ 22750947 (-) False tardbpb