RNA id: XR_006251171.1


Basic Information

Item Value
RNA id XR_006251171.1
length 980
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC122346816
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13101279 ~ 13103566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattacacaGTGTTTTGAAAGAGTTAAATTCTTCCCTTTCAGTGAAAGCCTGATGTGTTAAGAGTGTGACGGTGGGATTTGATTACTTGAACAGCACCTGGCATCTTTTTCCGCAGATTTgaaaattgacttttttaaaggaacaaaTTCGTCTACAAGAGCAGCTGAAAGCAGCAGCGGTCCTCACGGAAATTAGCACAGTCACTTGGGGAAAAATCTTTAGTGactcagagacagagacacCTTGGAGGGCTAATAGAGTTTTCGAGTTTTAGTTTATGAGGAAAACCACTCgcacaaaacaacagaaaagcaTAAAGGAGGCCACCGCGCATCTAGTTTAACCAGTTAAGAGATACGGGACGTGCTGAAGGAAGGAGGAGCTGATAAGGAGCTAAAAAACCAAAGGGAGGAAAGAATTCGGTGTTTTggaatttttctgtttttttcccccctcaagCAAAGAACGTTCTCTGAGTCCTGCGCCACCTGGTGGTGAAAACGTTCCTCCGGAGCGAGTTACGCTCTCGTTCTGTATCTGTACAGTGTTCACTATGTAGGTTAAGACCGAGCCGTTCTTCAGAGCGTCTGCTTCGTCCTCCAATTACAAACATCACACAGATCACGTTTAACCTCTAAAGCCTCCGTTCGAAGCAATAACAGTGACTCAtactttttctcattttcttgcTTCAGAGAACGCAGAGCGGACTGGAAGGCAGGAACGccgaaaatgtgaaaatatgagtctttttttttttttttctccttcgtAATCCCACCCCTTTAGCACCCTCTAAACCTATCATGAACTAGTTTTCGAAACAGCCCATTTGTTGTTGTCATTGTCTTAAAGTGTCAAGGGAGCGGGGTCGATCGTTATCAGAGAAATGCGGTTCTCCGTGTTCCGTCCCAAGAGTTCAGATCCGCAAACCGAACATGCAACAAAGATTCGCTTATGTTTTTGTtgcctttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66120 lncRNA upstream 6362 13093856 ~ 13095910 (+) True G44640
TU66066 lncRNA upstream 18042 13083380 ~ 13084230 (+) True G44615
TU66087 lncRNA upstream 314101 12786119 ~ 12788171 (+) False crocc2
TU66075 lncRNA upstream 402695 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 430607 12564092 ~ 12671665 (+) True G44611
TU66449 lncRNA downstream 209987 13313553 ~ 13313854 (+) True G44872
TU66450 lncRNA downstream 231623 13335189 ~ 13335542 (+) True G44873
TU66446 lncRNA downstream 233352 13336918 ~ 13338450 (+) True G44869
TU66451 lncRNA downstream 235468 13339034 ~ 13339305 (+) True G44874
TU66453 lncRNA downstream 238910 13342476 ~ 13342840 (+) True G44876
XM_043241811.1 mRNA upstream 20153 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 22226 13065838 ~ 13080046 (+) True inpp5d
XM_043241608.1 mRNA upstream 37843 13058859 ~ 13064429 (+) True gpr17
XM_043241607.1 mRNA upstream 37843 13060546 ~ 13064429 (+) False gpr17
XM_043241601.1 mRNA upstream 44151 13039523 ~ 13058121 (+) True LOC122346752
XM_043241840.1 mRNA downstream 15629 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA downstream 23949 13127515 ~ 13279180 (+) False LOC122346939
XM_043242168.1 mRNA downstream 210491 13314057 ~ 13333574 (+) True tprg1
XM_043241158.1 mRNA downstream 246955 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 246964 13350530 ~ 13389446 (+) False tp63
TU66063 other upstream 20153 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 321352 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1009817 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1092163 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 1129228 11972971 ~ 11973044 (+) True trnai-aau_2
TU66125 other downstream 5169 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 290663 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 868607 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 977367 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 2132645 15236211 ~ 15238200 (+) False pomgnt1

Expression Profile