RNA id: XR_006251202.1


Basic Information

Item Value
RNA id XR_006251202.1
length 1267
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122347223
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19149746 ~ 19151694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGAAGGCAAATCTCGCACGCACTCTGAACTGCCCTCCTGAAAAGGCTTTTAATcgtattatttacttatttataccTTTCTACCGAGAAACAGACGCATCAGATTGTTGCAAAACGAATCCCGATTGGCCGGCTGCCCTTGACCTTTGACCTACAATGAAGTAACATTCTAGTTCCACGCACATTCCACAGTGATCTTTGTAGTCTGTGAGAGGTTACGACCTGTTATATCACCGTAACCATCAGAACATTTTGTACGTGGGAAAAGGAAAGAGGAGAATGAAGACAATAGCCCATATGTTCTCGTGAGAGGACGACGGAAACAGCCAATGGATAACCATGAGAGGCCCCTCTCTctgcatcccttacttccgttCATGCCTCTTCGATCTTCCTTTCACTACGTCACTCCATCATATTTCTCTTCCTTTATCTCAACGTTGGCCGTCAATCCTTACAGCTCACATGCCTGCGCACAAACACGACACAGAACCGCTCTTCTCCCGCTGTGTGCCACAGGGCTGAATTGTCTCATGTGATCAGACTAACACAATCAAActtgtatgttatttttctcttatgcatacacacgcacgcacacagcTAGCCTTCCAGGCCTGAAACAGAAGCCTCTGCTATACTACTCAGGCAGACACACCCAAGTAAAACATGAACTCATCTCCTTACAAAcccaaatattatatttaaaaaaaaaaggctggcCGTCATAGATGGCTGAACATTTCCATGACTTACTGCGGTAACTGTAGAGACCAGAAATCGCCTACTGCTATTAGGTTAAGTAGGTTATTGGCTGGGCCAtaaattgttttgtgttgcatttatgtttttcttaataGAGCAgcaaaatgctacagtaaatgGAGTTCATTTCGTTTCTCTCATCATTTATGCACGCTTTCCGACCCCGTGTGAGGGAATGGCCTTGCCtcgttctttttatttatttatttttgccacatacaatgaaaatgaacGGTGCACACAGCCTGTCGTTCTTTTGTGTTccggagaagaaagaaagtcacaggCTGCAGGCTTGCAACAACAGGACGAGTACACGAAGCGTTCCTTCGGCGTAGAACCAAGTGCCTGACACACATTTCTCCTCGTTTACACGCGAATATAACGCTCGACCTCATGCGGACAAACTGTTTACCTCGCTGGTGCCTCTGACGTCACGACACACCCCTCGCGCGCGTGAGCGCGTGTGAgtgagcgtgagtgtgtgtgcgcgcgcagcAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 100910 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 101000 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 101000 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 105877 19043616 ~ 19043869 (-) True G46476
TU68814 lncRNA downstream 177376 18970170 ~ 18972370 (-) True G46463
TU68898 lncRNA upstream 60945 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 241783 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 241783 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 241783 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 454668 19606362 ~ 19607056 (-) True LOC122347383
XM_043242380.1 mRNA downstream 15 19129212 ~ 19149731 (-) True vdrb
XM_043242378.1 mRNA downstream 16 19129212 ~ 19149730 (-) False vdrb
XM_043242375.1 mRNA downstream 25770 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA downstream 25770 19113678 ~ 19123976 (-) False hdac7b
XM_043242376.1 mRNA downstream 25770 19113680 ~ 19123976 (-) False hdac7b
XM_043242479.1 mRNA upstream 1345 19153039 ~ 19173171 (-) True tns2b
XM_043242466.1 mRNA upstream 24172 19175866 ~ 19187427 (-) False eif4bb
XM_043242467.1 mRNA upstream 24172 19175866 ~ 19187426 (-) False eif4bb
XM_043242465.1 mRNA upstream 24172 19175866 ~ 19187426 (-) True eif4bb
XM_043242480.1 mRNA upstream 36801 19188495 ~ 19190509 (-) True LOC122347293
XR_006251201.1 other downstream 16 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 93615 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 432258 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 504612 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1375639 17743715 ~ 17774107 (-) False opa1
TU68985 other upstream 401625 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 401625 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 514740 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 691350 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 944695 20096389 ~ 20102458 (-) False srsf3a

Expression Profile