RNA id: XR_006251215.1


Basic Information

Item Value
RNA id XR_006251215.1
length 542
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC122347378
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15587506 ~ 15588222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCCACCCTCCATCTTACCAAGCCCCCGCGATCCCTCCAAGTTCAGTTATTACAGATCCCTACTCAGCTGGAATGAAGCATGCTTTTCATTCTGGCATCGAGGATCAGTCTGGCTATGATGACTACCTTTAAAACCACCATTCTCTTCATCATCTAGGACTCAGTAACTGTGGGATGTGGTCTACAGAAGCACTTTCACATGAAATATATCTTTAGCAATTTATAGAATTTTCTGCAGAACaactatagattttttaaagaatgattaatgataataaagacAATAACAGTGACTCATAACAGTTTGTAAAACAAGATATCAATCCATATAATGCATAACCTCTTCTGCAAACTAATTTCACTTATTCCCGGTTCTCACAAACGAGTCAGTGTATCTATTGTTTTagaatttgaataaattgatttttgtgaaACTTTTTGCTTGAAAGTGCACTTGTGTTGTAAATggatatttgtttaaaaaattacatttctgggatcatttacaaaactgcatgatttactttcttttatggaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251193.1 lncRNA downstream 6451 15580584 ~ 15581055 (-) True LOC122347074
TU67483 lncRNA downstream 96821 15489118 ~ 15490685 (-) True insl5a
TU67453 lncRNA downstream 98405 15486663 ~ 15489101 (-) True G45554
TU67480 lncRNA downstream 102539 15482906 ~ 15484967 (-) True G45579
TU67460 lncRNA downstream 267472 15319385 ~ 15320034 (-) True G45560
XR_006251219.1 lncRNA upstream 2845 15591067 ~ 15592196 (-) True LOC122347411
TU67511 lncRNA upstream 55847 15644069 ~ 15645396 (-) True G45602
TU67422 lncRNA upstream 128234 15716456 ~ 15745536 (-) False G45544
TU67424 lncRNA upstream 154733 15742955 ~ 15745536 (-) False G45544
TU67429 lncRNA upstream 154733 15742955 ~ 15745536 (-) True G45544
XM_043242507.1 mRNA downstream 96827 15489161 ~ 15490679 (-) False insl5a
XM_043242571.1 mRNA downstream 193383 15344929 ~ 15394123 (-) True sgip1a
XM_043241046.1 mRNA downstream 253573 15331236 ~ 15333933 (-) True LOC122346434
XM_043242964.1 mRNA downstream 256655 15327583 ~ 15330851 (-) True LOC122347580
XM_043241714.1 mRNA downstream 331346 15246429 ~ 15256160 (-) True LOC122346855
XM_043241018.1 mRNA upstream 6141 15594363 ~ 15600846 (-) True LOC122346414
XM_043241327.1 mRNA upstream 13210 15601432 ~ 15603448 (-) True LOC122346598
XM_043241258.1 mRNA upstream 68514 15656736 ~ 15685485 (-) True LOC122346545
XM_043242474.1 mRNA upstream 103040 15691262 ~ 15695534 (-) True LOC122347277
XM_043242475.1 mRNA upstream 168087 15756309 ~ 15765107 (-) True LOC122347279
TU67455 other downstream 256689 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1394340 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1906232 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 2119567 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 2119941 13467494 ~ 13467565 (-) True trnaa-ugc_115
TU67521 other upstream 15688 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 470746 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 471671 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 772978 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1228418 16816640 ~ 16830208 (-) True rgs8

Expression Profile