RNA id: XR_006251216.1


Basic Information

Item Value
RNA id XR_006251216.1
length 520
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122347383
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19606362 ~ 19607056 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCTATCCCCATTCATGCCAGGATAGCCATGTTGAAGCTGAATTGCAATGCTAGCGTGCAAAACCTGGACTCCACTATTCCCATTCCATCATGGGTGCCACCCCCTCCATCTTACCAAGCCCCCGCGATCCCTCCAAGTTCAGTTATTACAGATCCCTACTCAGCTGGAATGAAGCATGCTTTTCATTCTGGCATCGAGGATCAGTCTGGCTATGATGACTACCTTTAAAACCACCATTCTCTTCATCATCTAGGACTCAGTAACTGTGGGATGTGGTCTACAGAAGCACTTTCACATGAAATATATCTTTAGCAATTTATAGAATTTTCTGCAGAACAACTAtagatttttaaagaatgattaatgataataaagacAATAACAGTGACTCATAACAGTTTGTAAAACAAGATATCAATCCATATAATGCATAACCTCTTCTGCAAACTAATTTCACTTATTCCCGGTTCTCACAAACGAGTCAGTGTATCTATTGTTTTagaatttgaataaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 208632 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 208632 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 208957 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 363551 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 454668 19149746 ~ 19151694 (-) True LOC122347223
TU69118 lncRNA upstream 184586 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 194187 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 227014 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 234423 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 234785 19841841 ~ 19842967 (-) True tomm6
XM_043242483.1 mRNA downstream 38320 19560562 ~ 19568042 (-) True sumf1
XM_043242162.1 mRNA downstream 50420 19553317 ~ 19555942 (-) True tsfm
XM_043242164.1 mRNA downstream 54505 19547029 ~ 19551857 (-) True myl6
XM_043242163.1 mRNA downstream 54506 19547029 ~ 19551856 (-) False myl6
XM_043242213.1 mRNA downstream 105277 19486992 ~ 19501085 (-) True pfkmb
XM_043242557.1 mRNA upstream 2744 19609800 ~ 19612454 (-) True si:dkey-197j19.5
XM_043242485.1 mRNA upstream 6048 19613104 ~ 19619818 (-) True uroc1
XM_043241808.1 mRNA upstream 13101 19620157 ~ 19621083 (-) True chchd4b
XM_043241807.1 mRNA upstream 15499 19622555 ~ 19627477 (-) True sec61a1
XM_043241744.1 mRNA upstream 26123 19633179 ~ 19637946 (-) True ip6k2b
TU68985 other downstream 50431 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 50431 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 456632 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 550231 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 888874 18714174 ~ 18717488 (-) True G46423
unassigned_transcript_1266 other upstream 59378 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 235988 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 489333 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 554384 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 922123 20529179 ~ 20531834 (-) True G46926

Expression Profile