RNA id: unassigned_transcript_1117



Basic Information


Item Value
RNA id unassigned_transcript_1117
length 72
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaa-ugc_18
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13429651 ~ 13429722 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggggatgtagctcagtggtagagcgcatgctttgcatgtatgaggtcctgggtttaatccccagcatctcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 72130 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 74868 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 75471 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 76001 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 76582 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 107222 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 263616 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 267777 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 288480 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 393950 13823672 ~ 13835591 (-) False LOC122347350
XM_043242215.1 mRNA downstream 13164 13407566 ~ 13416487 (-) True tomm70a
XM_043241138.1 mRNA downstream 23755 13390703 ~ 13405896 (-) False tbc1d23
XM_043242546.1 mRNA upstream 42174 13471896 ~ 13478911 (-) True glmnb
XM_043242777.1 mRNA upstream 60228 13489950 ~ 13495596 (-) True gfi1ab
XM_043242771.1 mRNA upstream 66413 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 66413 13496135 ~ 13535440 (-) False evi5b
XM_043242769.1 mRNA upstream 66413 13496135 ~ 13534741 (-) True evi5b
unassigned_transcript_1116 other downstream 114 13429466 ~ 13429537 (-) True trnaa-ugc_17
unassigned_transcript_1115 other downstream 296 13429284 ~ 13429355 (-) True trnaa-ugc_16
unassigned_transcript_1114 other downstream 603 13428977 ~ 13429048 (-) True trnaa-cgc_7
unassigned_transcript_1113 other downstream 964 13428616 ~ 13428687 (-) True trnaa-ugc_15
unassigned_transcript_1112 other downstream 1143 13428437 ~ 13428508 (-) True trnaa-ugc_14
unassigned_transcript_1118 other upstream 260 13429982 ~ 13430053 (-) True trnaa-ugc_19
unassigned_transcript_1119 other upstream 445 13430167 ~ 13430238 (-) True trnaa-ugc_20
unassigned_transcript_1120 other upstream 633 13430355 ~ 13430426 (-) True trnaa-ugc_21
unassigned_transcript_1121 other upstream 796 13430518 ~ 13430589 (-) True trnaa-ugc_22
unassigned_transcript_1122 other upstream 1088 13430810 ~ 13430881 (-) True trnaa-cgc_8