RNA id: unassigned_transcript_1180



Basic Information


Item Value
RNA id unassigned_transcript_1180
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaa-ugc_69
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13447099 ~ 13447170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggggatgtagctcagtggtagagcgcatgctttgcatgtatgaggtcctgggttcaatccccagcatctcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 89578 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 92316 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 92919 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 93449 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 94030 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 89774 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 246168 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 250329 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 271032 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 376502 13823672 ~ 13835591 (-) False LOC122347350
XM_043242215.1 mRNA downstream 30612 13407566 ~ 13416487 (-) True tomm70a
XM_043241138.1 mRNA downstream 41203 13390703 ~ 13405896 (-) False tbc1d23
XM_043242546.1 mRNA upstream 24726 13471896 ~ 13478911 (-) True glmnb
XM_043242777.1 mRNA upstream 42780 13489950 ~ 13495596 (-) True gfi1ab
XM_043242771.1 mRNA upstream 48965 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 48965 13496135 ~ 13535440 (-) False evi5b
XM_043242769.1 mRNA upstream 48965 13496135 ~ 13534741 (-) True evi5b
unassigned_transcript_1179 other downstream 117 13446911 ~ 13446982 (-) True trnaa-ugc_68
unassigned_transcript_1178 other downstream 270 13446758 ~ 13446829 (-) True trnaa-ugc_67
unassigned_transcript_1177 other downstream 451 13446577 ~ 13446648 (-) True trnaa-ugc_66
unassigned_transcript_1176 other downstream 817 13446209 ~ 13446282 (-) True trnaa-cgc_19
unassigned_transcript_1175 other downstream 1010 13446018 ~ 13446089 (-) True trnaa-ugc_65
unassigned_transcript_1181 other upstream 234 13447404 ~ 13447475 (-) True trnaa-cgc_20
unassigned_transcript_1182 other upstream 602 13447772 ~ 13447843 (-) True trnaa-ugc_70
unassigned_transcript_1183 other upstream 929 13448099 ~ 13448170 (-) True trnaa-ugc_71
unassigned_transcript_1184 other upstream 1267 13448437 ~ 13448508 (-) True trnaa-cgc_21
unassigned_transcript_1185 other upstream 1571 13448741 ~ 13448812 (-) True trnaa-cgc_22