RNA id: unassigned_transcript_1260


Basic Information

Item Value
RNA id unassigned_transcript_1260
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-cgc_54
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13466986 ~ 13467057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggatgtagctcagtggtagagcgcatgcttcgcatgtatgaggtcctgggttcaatccccagcatctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 109465 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 112203 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 112806 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 113336 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 113917 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 69887 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 226281 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 230442 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 251145 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 356615 13823672 ~ 13835591 (-) False LOC122347350
XM_043242215.1 mRNA downstream 50499 13407566 ~ 13416487 (-) True tomm70a
XM_043241138.1 mRNA downstream 61090 13390703 ~ 13405896 (-) False tbc1d23
XM_043242546.1 mRNA upstream 4839 13471896 ~ 13478911 (-) True glmnb
XM_043242777.1 mRNA upstream 22893 13489950 ~ 13495596 (-) True gfi1ab
XM_043242771.1 mRNA upstream 29078 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 29078 13496135 ~ 13535440 (-) False evi5b
XM_043242769.1 mRNA upstream 29078 13496135 ~ 13534741 (-) True evi5b
unassigned_transcript_1259 other downstream 121 13466794 ~ 13466865 (-) True trnaa-cgc_53
unassigned_transcript_1258 other downstream 460 13466455 ~ 13466526 (-) True trnaa-cgc_52
unassigned_transcript_1257 other downstream 608 13466307 ~ 13466378 (-) True trnaa-ugc_113
unassigned_transcript_1256 other downstream 789 13466126 ~ 13466197 (-) True trnaa-ugc_112
unassigned_transcript_1255 other downstream 971 13465944 ~ 13466015 (-) True trnaa-cgc_51
unassigned_transcript_1261 other upstream 98 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1262 other upstream 437 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1263 other upstream 811 13467868 ~ 13467939 (-) True trnaa-cgc_55
TU66636 other upstream 201471 13668528 ~ 13681274 (-) False tmem131
TU66983 other upstream 693418 14160475 ~ 14193166 (-) True G45257

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU558775 True 273 lncRNA 0.40 2 CI01000340 3367021 ~ 3370826 (+)
rainbow trout (Oncorhynchus mykiss) trnaa-cgc-173 True 72 mRNA 0.56 1 NW_023494159.1 36570 ~ 36641 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_688 True 72 tRNA 0.56 1 NC_053125.1 10827483 ~ 10827554 (-)
striped catfish (Pangasianodon hypophthalmus) trnaa-cgc_5 True 72 tRNA 0.56 1 NC_047613.1 7883218 ~ 7883289 (+)
striped catfish (Pangasianodon hypophthalmus) trnaa-cgc_3 True 72 tRNA 0.56 1 NC_047606.1 9081010 ~ 9081081 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_688 True 72 tRNA 0.58 1 NC_056702.1 26265402 ~ 26265473 (-)
mexican tetra (Astyanax mexicanus) trnaa-cgc_3 True 72 tRNA 0.58 1 NC_035912.1 26709939 ~ 26710010 (-)
mexican tetra (Astyanax mexicanus) trnaa-cgc_5 True 72 tRNA 0.56 1 NW_019172608.1 231693 ~ 231764 (-)