RNA id: TU72136


Basic Information

Item Value
RNA id TU72136
length 371
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G48720
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 56405 ~ 64136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cccgTTGCAGGCCTGTGTCGTGGCTAGTGTGCGTTGAGGCCTTGAAACTGAAACTGGCCGCTTCACTCGAATGagcaaacgaacaaacaaacacaaagtacCGCTTCTTCCCGTTCCCGGATCGCGATCTCTAAATATTCCACCGAAGCGTCGATCGTCCCACGATGCCGGAGGAACACCCAACGTTTCCGGTAGCTGGGTGCGCTATCcggaggaataaaagaaaaaaagtcctgCGATCTTGAGATCCAACAAAGAAACGTCTATCCACGGTACACGACGACAGCGATCGTGTGAACGTTTTGACACACGAACACTATAGTACAGCTGATGGTCGCAGCGCGATGTCCGTAAACGTTCTTGAGAAAACG

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251465.1 lncRNA downstream 52338 1991 ~ 4067 (-) True LOC122349555
XR_006251485.1 lncRNA downstream 54541 1457 ~ 1864 (-) True LOC122349723
TU72155 lncRNA upstream 23414 87550 ~ 89420 (-) True G48733
TU72154 lncRNA upstream 23515 87651 ~ 89420 (-) False G48733
TU72159 lncRNA upstream 56883 121019 ~ 121395 (-) True G48736
TU72164 lncRNA upstream 105863 169999 ~ 170927 (-) True G48741
TU72166 lncRNA upstream 108158 172294 ~ 173013 (-) True G48743
XM_043244591.1 mRNA downstream 41331 8263 ~ 15074 (-) True LOC122348751
XM_043244840.1 mRNA upstream 147205 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA upstream 147205 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043245958.1 mRNA upstream 219197 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 275689 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 297887 362023 ~ 367395 (-) False si:dkey-171c9.3
XR_006251529.1 other downstream 32702 23604 ~ 23703 (-) True LOC122349836
TU72258 other upstream 147205 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other upstream 147205 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72302 other upstream 206233 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 216646 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 816466 880602 ~ 883811 (-) False zgc:162171

Expression Profile