RNA id: TU72239


Basic Information

Item Value
RNA id TU72239
length 1501
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G48781
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 194136 ~ 238177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTATGTTTTTGATCAGCTTTATTGAGAGTCCCAacgtatttgtatattttctacaTTCAATCATTTACAGgcctgcaaaaacacacactgaaacattttttagtaaTATCAAACCTCCAGTCTCACATATCAATGGCTCAATATAACAACTTTCTAACTGCAATCATATTAtgcttaacattttatatataagatACAGAATGTGAGATACATGGGAAAGAATATGCTGTCTCTGAAAACtaaagcaaattaaaacaatCTATAATAAAATTAGTTAGACTAACCACGTTTCAACATTAAAATCCCAAATCTGAGTATTTCTCAGGAGGATCCATTCTTCACTTCCTGGATTAAAGCTGAACACCATTAATATGTAAAACACATTCCTCTACAGTGCGATGCCGAGGGGCTGATCtcaggtcagtgtgtgtggGAGGAAGATCGAAAACTGTGATTACAACCGCAGAACAAgcaagtctttgttttttttggacgtGATCCGATAAGGACAAAGTGTGCTAAGGATAATGAAGGTGCGATGGCGATCTTTAGGTAGGCCTGTTGTTAAACAGAGTGACAGGATGGAGTCTTGCCTTCATCTCTCGTCTGATCTGACACCATGAGCACGGGCCGCAGAAGAAAGAGTACACACAGTCATTGCAGATAGAGTCCTGAAcgagaaaaagaggaaatgtTAAAACATAACGAACCGGAAAATAAGCTCCTTGACTCTTATGACCTCTCACTGTTCTGTATTTAATGAATTCACTGTATTGttgtaatgtgtttgttttgctctttCTAATAACGTCTATAAGGCTTGATTAGTTGGGGCTTCTTACCGTGATGCCGTAACGTCTGCGCGTGGACACCCTCATGGAGAGAGTGATTGGGGGAATACACCCGCAGCTGTCCaggagagggagacagagacatTCTCCGTGGTCTCTGGCTGTAATGCAGGCAAAGCACGGGAAACACCACACAGAGAAACAACCTGCAGAAGAACCACTCATTAAGTATCCGTCAAAGTAAAGCAACGGTTCAAttggtttttttcattttgatagtTTTACGGAAGTTCTGACTTGCGCTCACACATTCGTTGACGTTGTCGCATTCGCAGATGCTGGTGGTCCACTGGTCTGATGCAGCAGCCACTACCAAAGGCTTGGGCTGTTGAATCACCATCTTGGCTGCCATGATGAATTTTTTCAGATTCAAGAACTctgaaatcataaataaaaaaaatgacaattgaGATTCTAATTGACTTAATTAACAGGTAACTTCACAGTACACTAcgtcaaaaaataataacaacattgcataatagaatattaaaattatatataaaacagaatataatacaaaataaaataatttttaggcTGATTTTGTCTTACCTGGGAGAGAGAGGCAAGTTGAGCAAGTGACTGACACTTGAGAGCAGGATGCTGTCTTTTATTTGGAGGGGGAGGGAAGAAGTCGGGAATGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72252 lncRNA downstream 1123 190388 ~ 235517 (-) False G48786
TU72251 lncRNA downstream 1123 233911 ~ 235517 (-) True G48786
TU72263 lncRNA downstream 19169 215351 ~ 217471 (-) True G48795
TU72166 lncRNA downstream 63627 172294 ~ 173013 (-) True G48743
TU72164 lncRNA downstream 65713 169999 ~ 170927 (-) True G48741
TU72275 lncRNA upstream 1117 239294 ~ 241547 (-) True G48802
TU72281 lncRNA upstream 18370 256547 ~ 256785 (-) True G48808
TU72304 lncRNA upstream 41307 279484 ~ 280349 (-) True G48824
TU72292 lncRNA upstream 49078 287255 ~ 308325 (-) False G48817
TU72290 lncRNA upstream 53678 291855 ~ 294469 (-) True G48816
XM_043244840.1 mRNA downstream 22955 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 22957 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 221566 8263 ~ 15074 (-) True LOC122348751
XM_043245958.1 mRNA upstream 45156 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 101648 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 123846 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 123846 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 123846 362023 ~ 367372 (-) False si:dkey-171c9.3
TU72258 other downstream 22982 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 22982 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 212937 23604 ~ 23703 (-) True LOC122349836
TU72302 other upstream 32192 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 42605 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 642425 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 803831 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 931804 1169981 ~ 1220893 (-) False G49133

Expression Profile