RNA id: TU72252


Basic Information

Item Value
RNA id TU72252
length 792
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G48786
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 190388 ~ 235517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTTAGGAAGGCGAAACAtacagataataaaaacaatgagaaATCATACAAAATGAGTTCCgttttgtaacactttttttatttcaacacatGTACAATgacataatatattaacaaatatttatcaCATTAGGACAACATAACTAAAAGCAAAAGCTTTGAACCACTGATACAAACAGAACGTCAATGTGCTCCAAATctacaatacataaaaacatggGTATGGTCTGTCATCCTAAAGAATCATGTATTTCTAGAGAAGGGTTTTCAGACTTCATTCCTGAGCAGACTACAACTGAAATCCACATCATTCCTTGGATCAGAACTGAATTCCAAACAGAGAACATTACATTTCTCCAACACGCTTAAAGCTTATTTCTTTTCAGGGCCGAGGGTGACTGAAGTTCATTACTTCAATCGGTTGCGGAAGAGGGTGACAGGTTGGTTGCGAGCAATCAGCTCACGTCTTATCTGACAGTAGGAGCACGGTCCGCAGCAGAAGGACATCACGCAATCATTGCAGATCGAGTCCTGTtagaatgagaaaaagacatCAGTCGGCCACTGAACATGAAGCTGATTTCTGATATGAGGCTTGCATCAGAGAATATATCACACCAATAGgattcttcatttaataaaggccAGCTGATTTAACTtcatgcacatattttattatgcctaaaaaagctgaatttccatcccctaaataataataatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72166 lncRNA downstream 17375 172294 ~ 173013 (-) True G48743
TU72164 lncRNA downstream 19461 169999 ~ 170927 (-) True G48741
TU72159 lncRNA downstream 68993 121019 ~ 121395 (-) True G48736
TU72155 lncRNA downstream 100968 87550 ~ 89420 (-) True G48733
TU72154 lncRNA downstream 100968 87651 ~ 89420 (-) False G48733
TU72238 lncRNA upstream 1123 236640 ~ 238177 (-) False G48781
TU72239 lncRNA upstream 1123 236640 ~ 238177 (-) True G48781
TU72275 lncRNA upstream 3777 239294 ~ 241547 (-) True G48802
TU72281 lncRNA upstream 21030 256547 ~ 256785 (-) True G48808
TU72304 lncRNA upstream 43967 279484 ~ 280349 (-) True G48824
XM_043244591.1 mRNA downstream 175314 8263 ~ 15074 (-) True LOC122348751
XM_043245958.1 mRNA upstream 47816 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 104308 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 126506 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 126506 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 126506 362023 ~ 367372 (-) False si:dkey-171c9.3
XR_006251529.1 other downstream 166685 23604 ~ 23703 (-) True LOC122349836
TU72302 other upstream 34852 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 45265 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 645085 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 806491 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 934464 1169981 ~ 1220893 (-) False G49133

Expression Profile