RNA id: TU72259


Basic Information

Item Value
RNA id TU72259
length 1289
RNA type TUCP
GC content 0.45
exon number 3
gene id si:dkey-112a7.4
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 211341 ~ 213685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAAGTGAGAGTTACGACAGACTCTCACCACCGTAGATAGTGGGCAACTTCCGACTCGCGCTGAACACCGCGTACAGCTCGACGGAGAAGACAAATACGAGCGAACCGTGTCCACGTTCCGGACGAATACACGGTGTTGTAAACACTGCTTTCGGATCAGTTTAGGTGGATTGGCAAACATTTTGTCGGCGTCGCGGAAGTGCGTTGCCAACCAGCGACTTACGGTTGTTTTTTATGAATACACCTAGCGAAGTACAGCGGCAGGAGGACATGTACGGCATGGCAGAAATGCCCGACCTCATACCACCGGCAGGTGCTTTACAACCAAGTCCAGTAATCCCGTACGACCACGGACAGGCGGGGAGAAACAGACCAGACCTCCTGTCTGCCCCGCGAAGAATGCAGCGAGCCCCCAAACTCGGACAGATCGGCCGGTCTACGAGAGTGGTCATTGATGATGAGGACTTGGATGATATCATTAACAATAACAGAAGCTTTCCGGTTTCTCAGAGAGTATCACCTGTTGCCTGATGCATGACTGACTGTGCCAAAGCTGTTAAAAAAGGCCAACACACCAAAGCAGGCCTAGAGAATTGAACTAAAATCTCCCTCTCACATGTCGTCGTCGTCACTCTTCACTGTACAGCTTTAAAGGCTTTCACCACTTCAAGGTCAAACAAGAGGAACTGTGGACTTTGCTCCCTGTCCACGTAATGCTTGCCCATCACTTCACTGATGTCGTGCTTCTGTAGCACTAAACGATCCTGTCCGTTGTTCTTGGttttggaagtttttttttttttttgtcttgaagtGAAGATCTCGATGATCTCTAATGCAACAGGgctatatttattaaatttgcaCTTTACTGCAGAATAAGAAAGCTAACCTCAGCAGGTTGGATTACTCATCTCCCAAAGAGAACATTTTCCTGTGAATCTCTGTTAACGTGTAACGCGCCATTTGGTAAGACCTTTGGTTACCTTGGTAACCGGGGTCTACCTTGACATTTCTCTGAATGACATCGATTACTTGTTAATTGTAAGGATCTTTAAATCAGTCACTGTTTGTACGTGCCTGTTGATTTTGGTTTGAATTACAATCTTGAATGCATACCGGCTGAGACGAACAATCAGATCTTCTAAGTGATCTCAGATGTTGGTTGAAGTACATTGctcttaatgtttttaacttctAAATGTTTGCATGGAAATTAATGgatttttgtaaattgttttgGGGAGTGCAGTGGGGTGGGAGTAATAAAGTATGCATGAGTAACgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72166 lncRNA downstream 38328 172294 ~ 173013 (-) True G48743
TU72164 lncRNA downstream 40414 169999 ~ 170927 (-) True G48741
TU72159 lncRNA downstream 89946 121019 ~ 121395 (-) True G48736
TU72155 lncRNA downstream 121921 87550 ~ 89420 (-) True G48733
TU72263 lncRNA upstream 1693 215351 ~ 217471 (-) True G48795
TU72251 lncRNA upstream 20253 233911 ~ 235517 (-) True G48786
TU72238 lncRNA upstream 22982 236640 ~ 238177 (-) False G48781
TU72239 lncRNA upstream 22982 236640 ~ 238177 (-) True G48781
TU72275 lncRNA upstream 25636 239294 ~ 241547 (-) True G48802
XM_043244591.1 mRNA downstream 196267 8263 ~ 15074 (-) True LOC122348751
XM_043245958.1 mRNA upstream 69675 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 126167 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 148365 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 148365 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 148365 362023 ~ 367372 (-) False si:dkey-171c9.3
XR_006251529.1 other downstream 187638 23604 ~ 23703 (-) True LOC122349836
TU72302 other upstream 56711 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 67124 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 666944 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 828350 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 956323 1169981 ~ 1220893 (-) False G49133

Expression Profile