RNA id: TU72263


Basic Information

Item Value
RNA id TU72263
length 2030
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G48795
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 215351 ~ 217471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATTACAATTTATGTTTGACATACTTTTATTGTGTTGTAACATTGTCGAAGTCAgagcatttttgtaattatattacagtaaattCATCATGTATGTCAGGAATAGATATGCGATAGATCATATTGAAGCTCTGTATAAATCCTGCTTCatctctttttattcttttttatactttttcatTTGGCGTAAATGAGTCTCACATGTTCACAGTGTATAACGTTATTTTACCTCAGTGAGACAGGACATGTctaaacaacaacacacaagaGAAAACAtgatgacagaaaaacacatctcTACAGTTTATGCTTTATATACTCTTAACATGTTGCTTTAAGATACAAACAAAATTACCTCAATTGTAACATTTTCACGACTGCCttcaaataaattcatcatAGAAACGTTAAACATTGGCCCTGGTAGATAAGTGATAGCATACTGAGGCTCCATAAAGCAGCATGATTCCATCAGATCACAAAGGGATAGAAGGAGAATTTGGTCCTGGTCTGCacatacgtaaaaaaaaatcatctgagACTTTAGTCTTCTGTGTAAAACTGGGTGACTGCAAATGCACCGGACAATTTTGCTGTACTCTCTTTTGGGATCCTGTTTACACTGCAGCCCCTTCCTAGGATGCACTAAAGAGAGAgattcattatataaatacaattaaatcattttgtgatCCGTATTAATGCCACACAATGTTTtggcaaaaatatttattccttACATCTGCAGCCACAAGCGGCAAAGTGTTTCAAGGATTTCCTCTGTGAACAGACTGTAAGGAGATGTAGGTGACATTAGTAAcaatgctggaaaaaaaaaacccatattcGTGCGTAAACCACAGAGTAAATGATGTGCGCAGACGTTACCTGAGTTGTTGCACAGAATTGTGTTTAGAATCAGCAGGGCAAGCAGGAGACAAATTGGTTTGGACATCGTGATGCTGGTGCTGCTGCGGCTTATTGAAAAGTTTGGATTTCTGCCTTCCTATCCCTTGTGTAATGATTATCTCCCCTGCTGCTTTCTCACTTCACCGCCTTTTATACCCTGAACTGTTCGCGAGGTTTTAAGTTTAACGGCAATAAATGAGTCTCAACATGTTCGCGGTGCATACCGCAAATTTACCTGAATGAGAAAAGAGATATTGCTTGTTTACCCCATTCTAAACAACAGCACTCGTGAGAAAACATGTTAAATCTGATAAACGCCGATCTTGTCAGATCACAGTGTGTGGGACTGAATAACAGCAATGTATTAGATTCAGAGCATCCGTTATGAATCATTAGATGGAAGCGTCACAAAAGAATACAGCACAGTTTATTTATCCGCTACGGCATACATTAACAACCACggtttgaaatatttcttatctGCCATAAAACttctaattaaacattaaactaacctatacatatacattattagTGTGACTAGACATGTACTGTCTTTACATAAAATGTCTTGGCTCTGTTCTCCTATTGTCATGCGGCCTTCATATATTATACGTATGCGCATTTGCATTGCTTCGACAGTTTTCTGTAGCTCCCACTTTCTTGCATGCCGTGATCAGTCATGTACAGTCTGTATGCTATTACTCAACCTCATCCTGGCCTGGACATGTCCAGGAAACAAGAGGATGTACGGTCAACCCGCTATCGGactattgcattattttagcatttctcCCTTGTATGCGAGCAGCCAAGAGCGCGGATTTTTGTTTCGCTTGCGCCAGCATTTGTAACTCCATCTGATAAAACCATACAAACTCATCAAGATGGAAAGTacaaaatagataaatacacatctaaatacaaatgtaaaatagaaTTACAAATAAGACAAACTTTGTTGAGGGATCAGCTGACATGTTTCTGACTAAACAAACCACATATTGTGTGAGTTATTAGGTATTTCGTAAAAAAGTAAGTTGATCCATCACAAGACAGAGAACAAAGAGGGTGCTGGATGAAGTAAACATACAATGAACTGAAACCAAACCTGCTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72166 lncRNA downstream 42338 172294 ~ 173013 (-) True G48743
TU72164 lncRNA downstream 44424 169999 ~ 170927 (-) True G48741
TU72159 lncRNA downstream 93956 121019 ~ 121395 (-) True G48736
TU72155 lncRNA downstream 125931 87550 ~ 89420 (-) True G48733
TU72251 lncRNA upstream 16440 233911 ~ 235517 (-) True G48786
TU72238 lncRNA upstream 19169 236640 ~ 238177 (-) False G48781
TU72239 lncRNA upstream 19169 236640 ~ 238177 (-) True G48781
TU72275 lncRNA upstream 21823 239294 ~ 241547 (-) True G48802
TU72281 lncRNA upstream 39076 256547 ~ 256785 (-) True G48808
XM_043244840.1 mRNA downstream 1666 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 1668 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 200277 8263 ~ 15074 (-) True LOC122348751
XM_043245958.1 mRNA upstream 65862 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 122354 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 144552 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 144552 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 144552 362023 ~ 367372 (-) False si:dkey-171c9.3
TU72258 other downstream 1693 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 1693 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 191648 23604 ~ 23703 (-) True LOC122349836
TU72302 other upstream 52898 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 63311 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 663131 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 824537 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 952510 1169981 ~ 1220893 (-) False G49133

Expression Profile