RNA id: TU72302


Basic Information

Item Value
RNA id TU72302
length 2485
RNA type TUCP
GC content 0.46
exon number 3
gene id G48823
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 270369 ~ 274498 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaattggagagCCGGAACCAAGATAAAGGGAGGGAACGCTCCCTCCCCTTTACTCATGACAACCAGGGACGCGACAAACGCTCCATCACCTTCCTCTGCAACAGCGTTAGATCTCCCAGCAGAGACAGAAGAGGCCAAGACTCCATCTGACCAAACTGGAGTGTATTACAATGCTCTCGGATGTacatgtacatgtgtgtgtgtgtgtgtgtgtgtgtgcatctgtctCAGTGTTTCTGGCTTCATCTTAAGGTTTCACTGTGCCTTTTAATCCATCAAGACCAAATCATCCACACCGGAGGGTCAAAAATCCCCTCCTGACTTTCTTTTAATTGCGGGCCGGAAGCTATCGAGGGTGTGCGTCGCTTTCCAAGCTCGTATTTATTCCGCCTTCCTGAGATGCTGAAATACTGAAGATTATCAACACTCTGAGCCTGTCATTTCCTtaacgtctctctctctctctctctctctctctctagctccGCCTGCCGACACTCGTGCCGCTTTCCGTCCTGAAGAGACAGAATTCGTTCTGGGTTGTCTCATGTAACGTTCCTCCCAATTTATACGCTCTTACTGCATGTCTCACCAACAAAACGTGTACAAACGGACACACACTCgtacacacacagattaaaCACCTTTCACATAATGACTTGACCTTGGACAAATGTCCTAATTtcatgtttggcattaattatCCGTCTCCCTTCCCCACCCACCCCCAATCCTAACCCCTCTTAATCcttagacaaaataaaaacaccaataaACAGGAACCATCTACTTCATCCCATGAACAACGCaaatattaaaggaaaaaaaaaaaatactcaagtTTTTTCAAATTCAAGGCACAATGTCTCTCCGTTTCCCCTTTTTGACCTTAAATTCAGAGTACCACAGACTTAACTGTCGATCGCTCACGAGAGGCTCCGCCTTCAACCCATCGCCTCTCTGCTAGCTCCGCCCTCATTTAGCTAACACTGTTTAAGAGATGCGTCTGTTTGGGAGTGTTTCACAATCCCACACCAGTGAGTACAAACAATCAAAAACGAAACAATGACAACAACGACAACAgcgaaaaagaaaaggaaaaaaaaattaaaataaaacccaaaaagtCACGTCCTGTTTTCTGTGTTATGTCAGAAATTTGAGTCATATCCATCAGCTCATTTTTGGCAAGCTTGTCTTAAATAAGCACTAAGTACTGATAGATAGGATAAACATACACCGTTACGTGTGGTTTAAAGTAGATGCgttcgtctttttttttttgtatcattttcttCTCATAGACTTTAGTCGATTTTCATTCGTCAGTTTAAAGGTTTACGTGAATGCAAGCAGGGACAGAGTTCGCCATGGTGTCTTGCTTTAGACGTGGGTCTTGAGGGGGCAAGATGACTTTTTACGAGACGCCATTCACCAGGGCCAGAGCCTCCCCGGGCGATGCCACGCCATTGCTAGGGGAGCGCTTAGGAGTGTGCTCTTCCTTGGGTCACCTCCTTCTTCCCTGGGAGATTCTGTCTGCTCTGGGAATCGGCACGAGAGATGAAGTCAGCAACAGTAACTATatcaacagagagagaaacagcagTCAAGATGAGGGGGGAGCGTCAAACAAGAGGAAAAGTCCTATAACCTATAGCAAGAAAACAACTCTTTGGATTGCATTTATATCTTTCACCTTCTGTAGGCCATGACTGTGAGGATGATGATACACAGGGCAACATTTTGATGGGCAGATTTtgttttgagcaatgttgcttgGGCACTTTTCCATTGAAAATTCCCATTTCAGTCTGGGTAATTTAAATCAGTCTTGGGCCCTGTGTCTCACCCGGTTGTCTATTGATGGCAACTTTTCCCAAAGTTGGCCAGCAACACTGCTCAAAAAGTTGTCCAGTGTATCACCAGCCTAGTGCTGTGAAATTAACAGTGCCATTTACAATTTTGAATTTTGCTAGTTTGAACCCCACCCAGTcccttctctcgctctctctatctctctctctctctctcgctctctctctccaatACCTTCCTGTCACGTTCTACTGAAActgaaaaactaaagaaaaaaacagccttAAAAGTTGTAAATGTTCAACTTTTGTCTGTGTAGTCCCGTCCTATCAGTTTTGacccttccctctctctcacttgGCTGTCTGTCGCGGCTGGTAGAGCCTCCCTCAGGACGATTGCCTCTGTTACGACGGCGGCGGCTTCTATTACGGCGCTGGGGCCTGCCTTCCTCTTCTGAGAGAACCAGTCCGTTCTCACTGGCGGCTGCCTGGCTGTCGGATTCATTAGCGGCTGCATCCATAAGGCTGGGTTCCTGGTCATTACGCCGACGGCGTGAACGTCTCCTGCGGTCAGTGCCGCCCATGCTTTCACTGGCATCTGTATCACCGCCCAATTCTCCTTCTCCCTCCAGCAGAGAGTATGGGTTACTGTCTGGATCTCGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72281 lncRNA downstream 13584 256547 ~ 256785 (-) True G48808
TU72275 lncRNA downstream 28822 239294 ~ 241547 (-) True G48802
TU72244 lncRNA downstream 32192 194136 ~ 238177 (-) False G48781
TU72238 lncRNA downstream 32192 236640 ~ 238177 (-) False G48781
TU72239 lncRNA downstream 32192 236640 ~ 238177 (-) True G48781
TU72304 lncRNA upstream 4986 279484 ~ 280349 (-) True G48824
TU72292 lncRNA upstream 12757 287255 ~ 308325 (-) False G48817
TU72290 lncRNA upstream 17357 291855 ~ 294469 (-) True G48816
TU72293 lncRNA upstream 25747 300245 ~ 306365 (-) False G48817
TU72294 lncRNA upstream 31923 306421 ~ 308325 (-) True G48817
XM_043244840.1 mRNA downstream 56684 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 56686 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 255295 8263 ~ 15074 (-) True LOC122348751
XM_043245958.1 mRNA upstream 8835 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 65327 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 87525 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 87525 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 87525 362023 ~ 367372 (-) False si:dkey-171c9.3
TU72258 other downstream 56711 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 56711 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 246666 23604 ~ 23703 (-) True LOC122349836
unassigned_transcript_1267 other upstream 6284 280782 ~ 280855 (-) True trnan-guu_33
TU72452 other upstream 606104 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 767510 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 895483 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 895483 1169981 ~ 1220893 (-) False G49133

Expression Profile