RNA id: TU72309


Basic Information

Item Value
RNA id TU72309
length 4446
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G48825
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 309044 ~ 336585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGTGCATCATTCAGGATTTATTCAAATGGACAAAAAGTTCATTTGACAACATGATATGAATCACAGTCACGTACAAATACTGCAATAGAAAACACTtttgtgcaaataaatacatattaaagtTAACATCTCTCATCAATAAAACAGACAACAGGTACTTCATGTCTAAGAAGCGCTTTGGAATAAATTATGCACATTTCTTTTCCTTCCAAGCAATTTGGTAATAACTGTATAGCCTTTTTGGACGAGAAAAATCACAGGTTTCTTTGGACATACATCGTAAACACGCTCACCGACGCCTGTAAAAGCAGTTTACTCAGGCTTAACATTTGTCTTTGGCCCGAAACAGGCTGTTTGCATAGAAAAAAGCAAGCAGATGCCAACTAAACAGCTGTTTACTTGCTGCATCCTGAGTTGAAAAGTTAGAAGAAGCCGGCGTTCTGTAGATAAGAACATAGGAGGTCTGTGGCGTGTCCTGTTTTACATTACAACATTTAATTCGGTCCCGGTCCTGGCCCGGCTCCTTCTGCACCAATTGAGTGTTGGGTTACAGCGCAAAGAGGCTCAGCACCCACCCGGATTGCAGGAATGAGTGGAAGTCCTTCGTGCCAAGTCTCTCCAATAACCCCCCGTGTGACACAGAAGGGACCTTTGTGAAACGATCCCTCCACTGACCAGTGAACACTGTTTAATTAACCttttctcctctccctcctccCATATTCCCATGTTTTCCAAGGAGGccgaaaaagaaaagcataatCTCTCCTTCCAACACCCACGGTCCCCCGCACAAATACTCACACCTTTCACTTTTAGTAATCAGAGCGCaagaatttcttttttccctcctcGCTCTATTATAACAGTTCAGAATCGCCCGTTGTTTAAAGACTGGACCGGAAAAGGTCTTTCTAAGAGTGGAAGGCGGTCGGGGCTGCGTGACGGTGCTTGAGGGAAGCGGTCGGGGGACATCCTGGCGACCGGGAGCCCAGACGAGCAGGAGCGAATGGGAACAATAGCCCTACACGACCTCCCTGCCCCGAATCCAACTCCCGGGAATTACGGCGAGCGGGGAAAGAGAGCGCATGAAAAGAATCAAATGCCTTTAATAGGTCATAAACAACTCAAatgctaatgcaaaaaaaaaggagggtGGAGGTTTTTTAAAACGTGCAGAGACAAAAAGTCAAAGTATGCCAAGGAAAGGGACTACAGTATGAGTTTAGCCCTTTCATTACAGGGAGGATCTCGTTATGTCATGATCGGATCTTCACGGACAAACAAGGGAGTTGCCTGGAGATGCTTCGCTGAGGTTGTCTGAGGACGACCAGCAAGGTGATGGACGGAAGAATGGATTCGCATCTCCAGAGACGGCATGTAGGGGCCCAGGTGCGCAATAAGAGCATAAAAATGCTGAGGGAATGTAAAGAGTCCCGAAGGTAATGACATGAGAGAATGCCGCAACACACCCAGCAAGCGAACCGGGCCAAAAATCAATCCGATGGCGCACAGCGTCCAAAATGAACAGTCTGTGAGATGGTGCCTCCTGGTGGTGCCCGACAGGAACTTCATTTTGGGAAGCTGAGTGGAAATTGGCTGTTTGGCAGCCACTAGAAACTTTTTGGAAAACATATGCCACTGGTAAGACCAAATAGCTTGTTGCAACAGCAGAACGACAAAAGGGAGAATCAGGGCACTTCAACATAACTATCGAAGGCTTACttcaaacataaacaaaattcTGCCATCTGGTTACTCCCCCCTGAATTGATCCAAAACTGTATGACCTTTAATTCTTCAGCAGAAACAAAAGAACTAATTTTGAAGAGTGCCGGTGGCCAAACCGTTTTAGTTGCTATTGGTTTTCATTCTCAAGTCATACAGGTTCAGAacgagtgagtaaatgacagtaTTTTTGGATTAACCGTTCCTTTTAAGGCACTCTGTTATACTGGCTTCTGTCCTTTTGAAGTGAAATTTTCCAAGAGTGGCATGTTATCAAAGCCTCCTTCTTAAAAAAGTGAGAAACTAAGGATCGTTTTGCTAGTATGTGTACATGACAAATGGTAAATGCATCGGTGTGACTTCTACATGATACACCACATCTCACTTCACTTCTACAAAAGAAGGCACATCTTCCCACAGGGATCGCTCGACGCACACAGGTTCCGACAAGACACCCTTAACGCACGTTTCCCAGATCATCTCAGGAATGTTCTCACCCTTCTGAAGTTCCTTTCGAGGTCAAACGTCAACTCCAGGGATGGAAACCTTGCTAAAAAGTAGCTTAAACTACTTTTAGATTGTTGGCTGGCCTAAAACCGTCTCAGTCGGTTAGTCTCCCATTCAGATAAATGCCCAAAACCAGCGACCCAGATCAGCATGGGAGACTAGCAACCATATTAAGCTACTTTTAAAGTAGAGTAAATCaccttaaatgaaaaaaatatatatattaagtcaCTGATCcccatatttaaatgtgtgcagGCAGGAAATCCTGATGGCAACAATTCAGATGAGGGCTGATAAGAGGTTGACAGGTGTGAGAGGACCGCATTTTTCACATCGTCTCTGTAGCCTCCGGACAGGCTAAACAATTCCTGTCTGAACAGGTCCAGTGGTGGAAGAGCGAAAAGCTGCCTCAGGCCACTCTCACACCACTGTGTATTAGCAGTACTTCAGCGACACACACAGTCCTACCACCACCATCTTCATcgtcaacatcatcatcatgcCAAGATGATTTAacccgtctgtgtgtgtgcgcgtgtgcagGAGTGTCTGTTCAGTCTTCAGTTGAAGAGGATTGAATCCGGGTCTCTGTTGGCCATCTGCGCCATGTGTTTAAGAATGTCCTTTTTAGTGATGATTCCCAGTAAACGTCTAAAAAAGAAGGGAGAAAAGGGattcttgtttttaattaatacaaatcaCTGAACTGTCAAGTCACACAAATCAAACAGACAATTATTGAACAGATGGTCCTTGTTAGCATATGCATGAGAGAGACTATGTTTGCATAAAAGTTCAAGGCCGCATGTTCaaagtgtgcgtgtgtttccAGTCTTCTTGCTTTTTATATTATGTCATTTCCTTTTATTGTCCTAGATAGACTTGAAGGGTGGATCATAGGAATCCAAGACCAACAGCCACGCTGATCCGCTCAACATCAGGACCTgattaaaacacacactttaaaagGCAAAACAACTCCAGCAAGAACCAGCTTCAGCTGTTTTGAACTAATATGGTAGGGAGCGCTTTTATGAAGAAAAGACATTTGCGGAAACCAAAAATCCCCAGAAACTCAAATTGGATTTTTATAAGCAGAAATGTCCTCATGTCATAAGTGTtgagattttgttttatttaatcagtgATGCACTGGATATTTGcagtgtatttatatgtattggGCTATTCACAATGCAGACCATTTTAAATTGGCTAGTGAGGTTACCAATGGCAAAGGCACAGAGGAAAAACTCTTCAAGATATTTACGTAGTTGTGGATGCAGACAAAATcttgggaggaaaaaaagatgaGAAATGCCTCCTGCTTGGACTGGCGCATATTTAAACAAAGTTTAACAAACATAGTCTAACTGCAAAGTGGAGACAACAGCTCTGTTTTTAAACCCAGTGACACTGTAAATCATGAACAGACTTCAAGGCAACATTCGAACTGAGCTAGAACCTCATACAAACATGGGAGAGTTACTCACAATTGATTCCAACAGAAAATGTTGCTAAGTAAACTTATTTTGTTgtactttttgtaataataataatttttaaaaaagttaaaaagtgaGCCCCTCAGtgtcataaaatatttgaagGCTCATGTTATTTCTGATACTTCTGCTGTACTGAACAAACTGAACAAGTTATAATAATaccatattattaataataattcccAGTAagtttcaataataataacgtttttagttttgttttgttttaatcaattcaaattaaaaaaaggcttttctagtttatttgtactttttactCACATCTGAAAGGTTTTCATTCACTTCTaaccaaataaacattttagtgcttgacataataaaataaataaataaaatcacacttaTTTCTAGTATATCCAGGTTTTTCATGGGTAACCTGGTtaaaaattagggttaaaatttattttaaaatggctaaaaataaagatgtaaGTTGAcattgtttttctcatttaaaataattatatattgttttgaggTCCCCTTGGAAGCTTACTGAGACCGTGGCAATGATATATAGAAcacaaatatattgtaaaaaatataatttctcacTACTGGACAACTTGTCCAGCATTTTGAAAGAAAGCTTAGCTCTTTGCAAGCTATTCTTGGGTGGCCTTATTAGATTGTGATGatgtttttgtcaaatttaGGTTATCTTGTTTGGGGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72292 lncRNA downstream 719 287255 ~ 308325 (-) False G48817
TU72294 lncRNA downstream 719 306421 ~ 308325 (-) True G48817
TU72293 lncRNA downstream 2679 300245 ~ 306365 (-) False G48817
TU72290 lncRNA downstream 14575 291855 ~ 294469 (-) True G48816
TU72304 lncRNA downstream 28695 279484 ~ 280349 (-) True G48824
TU72411 lncRNA upstream 199517 536102 ~ 579489 (-) True G48895
XR_006251322.1 lncRNA upstream 294201 630786 ~ 634062 (-) True LOC122348399
TU72447 lncRNA upstream 475411 811996 ~ 812549 (-) True G48926
TU72435 lncRNA upstream 483052 819637 ~ 822438 (-) False LOC122348397
TU72458 lncRNA upstream 562558 899143 ~ 903900 (-) True G48936
XM_043245958.1 mRNA downstream 24044 283333 ~ 285000 (-) True tifa
XM_043244840.1 mRNA downstream 95359 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 95361 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 293970 8263 ~ 15074 (-) True LOC122348751
XM_043244534.1 mRNA upstream 3240 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 25438 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 25438 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 25438 362023 ~ 367372 (-) False si:dkey-171c9.3
XM_043243146.1 mRNA upstream 209518 546103 ~ 553394 (-) True gpr185b
unassigned_transcript_1267 other downstream 28189 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 34546 270369 ~ 274498 (-) True G48823
TU72258 other downstream 95386 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 95386 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 285341 23604 ~ 23703 (-) True LOC122349836
TU72452 other upstream 544017 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 705423 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 833396 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 833396 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 1561498 1898083 ~ 1898826 (-) True G49309

Expression Profile