RNA id: TCONS_00010235


Basic Information

Item Value
RNA id TCONS_00010235
length 760
RNA type nonsense_mediated_decay
GC content 0.51
exon number 6
gene id XLOC_005333
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 21669385 ~ 21684255 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTAGgtctgttgcagctggaaggtggCGGCGCTCTCCTGACTTCCCTGCATGCCATGGGCTGCAACTGTGCCATAGAGAAGCAGTCTCTTCCTCGCAGTGTCTGCTGGGCGAGACGCTCGCCCTGCCCTCAGAGTGGTGAGATGAAGTCTTTTCCAGAGTCATATACTATCATCCAAGTTCCAGTGGATGACTTTGTGACCATGATTAACAGCTATTGCAAGATCCCAGAATTCAAAATGTCAGAAGAAATACCGTGAGGCAGTGCTGGGCGAGGAGAAGAATGTGGGACTTCAGGGAGGGCAgaaaaagagaagaaagaaagacGATATCAATCAGCTTCCTGAGGTCTCGCGAGTGCAGGTGGAGGAGGCTTTGGTAGACCTGCAGTTGCAAACCGGGGTGCAAGTTCGCTTCCTCTCTACCTGGAAAGACTTCACTGATTATATTACCATGTCAACCAAAGCAGTAGCTGAGGCGCCGTTCAAGCGGGAGCGAGAGAAGACGGGATTTACGTTTTGTTTGGAGAGTGAGTGGGCTGGAGGTCAGAAGGTAGACCGCACAGGGAATGGCCTTCTGCAAGTTTGGAAGAGACAAATACAGCAGTTGAACCGCGTCAGCCTTGATATGGCCAGTGCTATACTCAGTGCCTACCCCTCTCCTCGGCTTCTTGCTCAGGCATACACACGGTGCAGATCTGAACAGGAAAAAGTTGGCTTGTTGTCAGACTTACTCATTCGTCGTGGAGAGGGTGTGACATC

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0031297 replication fork processing biological_process
GO:0031573 intra-S DNA damage checkpoint biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0006281 DNA repair biological_process
GO:0048476 Holliday junction resolvase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-3191 Predicted to enable DNA binding activity and endonuclease activity. Predicted to be involved in DNA metabolic process and mitotic intra-S DNA damage checkpoint signaling. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Holliday junction resolvase complex. Orthologous to human EME1 (essential meiotic structure-specific endonuclease 1).

Ensembl:

ensembl_id ENSDART00000153099

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010222 lncRNA downstream 1088510 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010223 lncRNA downstream 1090961 20580889 ~ 20581988 (-) True XLOC_005327
TCONS_00010219 lncRNA downstream 1263203 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00011121 lncRNA downstream 1338240 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00011120 lncRNA downstream 1607122 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00011123 lncRNA upstream 483410 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00011122 lncRNA upstream 483410 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010240 lncRNA upstream 483410 22164030 ~ 22220870 (-) True XLOC_005335
TCONS_00011124 lncRNA upstream 589880 22270500 ~ 22280703 (-) True XLOC_005337
TCONS_00011125 lncRNA upstream 763020 22443640 ~ 22445101 (-) True XLOC_005340
TCONS_00010229 mRNA downstream 876291 20788243 ~ 20796658 (-) False XLOC_005331
TCONS_00010228 mRNA downstream 876519 20788243 ~ 20796430 (-) False XLOC_005331
TCONS_00010230 mRNA downstream 876973 20788249 ~ 20795976 (-) False XLOC_005331
TCONS_00010231 mRNA downstream 877082 20788315 ~ 20795867 (-) True XLOC_005331
TCONS_00010226 mRNA downstream 1007084 20662426 ~ 20665865 (-) False XLOC_005330
TCONS_00010237 mRNA upstream 165 21680785 ~ 21684223 (-) True XLOC_005333
TCONS_00010238 mRNA upstream 118510 21799130 ~ 22039350 (-) False XLOC_005334
TCONS_00010239 mRNA upstream 118520 21799140 ~ 21834611 (-) True XLOC_005334
TCONS_00010241 mRNA upstream 549792 22230412 ~ 22238004 (-) False XLOC_005336
TCONS_00010243 mRNA upstream 629745 22310365 ~ 22355430 (-) False XLOC_005338
TCONS_00010232 other downstream 103050 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010220 other downstream 1088510 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010211 other downstream 1483663 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010183 other downstream 2934420 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010161 other downstream 3966048 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010242 other upstream 550526 22231146 ~ 22238004 (-) True XLOC_005336
TCONS_00010246 other upstream 670012 22350632 ~ 22355405 (-) True XLOC_005338
TCONS_00010257 other upstream 1346256 23026876 ~ 23068605 (-) False XLOC_005347
TCONS_00010269 other upstream 3222051 24902671 ~ 24904931 (-) True XLOC_005358
TCONS_00010293 other upstream 4459585 26140205 ~ 26140321 (-) True XLOC_005374

Expression Profile

//