RNA id: XM_043243797.1


Basic Information

Item Value
RNA id XM_043243797.1
length 3586
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC122348397
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 819637 ~ 829670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatgtagaaattaaatatgctgtatattaaaaaaaaaaagctttagtaTAGTTTTGGTGTATTGTGTGGCATTTGTTGTTGGATTAATGATTCAGCTGTGTCCCCTGCCCCCTCTGTAGACCCCAGGAATGTCACACTTTCAGACAGACCCCAACAGCTGtaaggagggagagagagagagcacatggcactgGCTATTTTTAGTTCATTCAGACTAGAACatctctccttctttctctgGACGTGGCTGTTCCTTCTGGATCTCTCCTCGGCTGAAAGTTCTGGATAAGTTTCACAGCGGCTGCACGAGTTCATAAGTACCCGAGACGAGCACAGGACAGAGCGTATAAagaaggaaaagagtccagcgATAAAGTCAACCTAAATACCTAACAGGCCAACATGGCTCTACTGTGTTACAACAGAGGCTGCGGGGATCGATTTGACGCCGACAAAAACTCAGATGATGCCTGCCAGTTTCACCCCGGAGTGCCAATCTTCCACGACGCCTTAAAGGGCTGGTCCTGCTGTAAAAAGAGGACGACAGATTTCTCGGAGTTCCTGTCAATCAAGGGTTGCACTCGCGGGCGCCATAGTAACGAGAAGCCCGAGGAGCCTCTGCGGCCAGAGGTGACGTCTGACAAGGGAGACGTGAAGCGCCACAGTGGAGGGGAAATTATCTACCAGGGACCCAAATCTGCAGAAGCCCTGGAAAAAGAGAGACCCAGCTCAGACGAGCCAAAGACAAAGCTGCAGGTGAAGATCGCTCCCTCTCTGGCTCAGATCGCTGAGAAAATGGAGATCACTGagagggagaagagagagaagctgGAGAGTCAAGTCATGGTGGTTGGGGTGAAGTGCAAGAATGCGGGATGCAAAACAATCTACCAGGGTCCCCAGACAGATGCAGAGATGTGCAGATATCATCCCGGGGTGCCCGTCTTCCACGAAGGATATAAATACTGGAACTGCTGCTGCATAAAAACCACTGACTTCAACGCCTTCCTGGATCAGAAGGGCTGCACCACTGGAAAACACTGCTGGATCGCCAAACAGGACAAAAAGAAGGTGGCTTGCAGGCATGATTGGCACCAGACAGGAAAGCAGGTCGTGGTCACGATCTACGCCAAGAACTCCAGTCCAGAGCATTCCTACGTGGAGGCGAACCGCACAGTGTTAACATGCCACATTCAGTTTGAGGGGGACAAAGTGTTTCATAAGGACATCCACTTATGGGGGGTGATTGACGTGAAGAGCAGTTTTGTGAACATGGTGCCCTCTAAAGTTGAAGTGACCATGCGGAAGGCTGATGCTGTAGCCTGGGGGAAGCTTGAAGACCCCAAACACAAACCTGAGCCAGAGGTCACCGACCAGATGAACACCGAACAGGAAGACGTCAAACCCGACTGGTACATCTCAGATGATGACATCAGTGAGTCCGACTGGGAAGACGAAGAGGAGGACCAGAAAGAGAGTgaggagaaaaaagaagaaaaacaggcAGACGATGGACCCCCTGAGCTAGAAGAGCCTGCTGCTGTCCCCCcagaaaaatgaacattttattctgaGCTTATGGATTTGTTTACAAGATCACATGGGATTTATGCAAACATGGGACTGCTGCTTTCAAGtagttggctttttttttttttttaagtttctctcactgtttttctgctaaaatatattttactacattttattgtgtgctTAAAGGTTAGAGAAGTCTTAAAACTTGTCATCCAGTTTTGCACACCGTCACaggaatttttgaaaatatcactttaaaacattttaaataactgtgtGTTATATTTGAAAAGGTAATTTATTCATACGATTgggaagctgaattttcagcatcattacttccaGTCTTTAGAGTCACACAATCATTTCTAAAATCGTTCTAGTGTGCTGATTCATGTTGTgctatttgatatttaatttctttttcaggattctctgaATTTGTAATCGCAAACATCTTACCTCCAACTTTTTACTGGCAGATTTTcagcattaaaattaatttgttaataaacGGAACCGTCTAAACTCTCATACTGTGTTTATTCTGCCAAACCACGGTAATGAAGTGCAACAGAACAAACAGCAATggccacactttatttttgcGTCAACAGCAACAATCCTGAAGTAGATGATTGCAGTCAGACAAGAGTCCAAGGCCATGGAAGCTTGACTGCAACCCATATggcaaaatactttaaataaaaaggataaATAATACAGCTTAAAAGTAAACAGTAGTCTTGACGATGAAGAGGATCAGTACCTGTTTTGGTTCTTTTTCTCTgttcaaagaaaaaattaaaaaatacattttcataaaatcaTTGCCTTCCTCCCGTACCTGATGACCACAGTCATAACCGATGTGCTGATACGCAGAGATGCTGAAAGTAACGTCAATCCAAACTAAACGGCACGCAGCAACAATTCATCACAGATGAGAAAGTTtgaaacaaacacatgcaaaatgataagaaaaaaatacagtccAACTTTTGAGGGGCAAAAATCAGCACCTAGACTGTCCATAAACGTTCATATCGAGACCGTATTCGCAATTATCTTTTGGTTTTTACAGAGCAATACTGTTAGACTTTGGCTCACAACGATCAAGAAAACAATTAAGGTGTCCAGTATTGTGTATGTTATTTCTTTCAATGGAGAAATGTTACACTGTACCCTCTGTTGATAAATACTGTTTGTGATCCACACATCAGGCGAGTTCAAGTTTTGCTTTCCCTCAGGGCTACCACGTACAGACTGACCCCGAAAAGGGCCGACGGTTGAATAACATTCAGAAATTGGATTATATACTGTCTTATATGTAACACATCTCATCGCAGGTTTCCCGTGAACGAGATACCAGTTTTCATATGATGAAACAAAATGCACAACCTTTTaagttagctttttttaaacatttgttttctatattaaagTGCAAGGCGAGATAAAATACATCTTGAAATGTACGACATACAGCATCACTTTCTTTCACGAGATTTCcctgcagaaaaaaagtaaagaaacagCTCACTTTAAACCACTGCGCTTCATTTACTCACTTGGCACAAGAGATACGGCACTGAAGCTTCTAGAACGACGGCTCAATTGACACACTAGTGATACACCATCACGACTTGGCTGACGATCCgagagtaaaaagaaaaagtagacctttttttttctgcataagGGCATGAAAGGCATGCAGAAACTAGACGGTCTTCGATAGAGCGATACAGAGACTAGATGCAGGTTAACTATTCAGCCAGTTTGTCGAATAATACAGGTCCACCATACATTCATTTATCAggatattccttttttttttttttttgcacgtgtGTTTAACTGTcttcattttaatacagttgTTTTATATGATTTAGTTTGTTCCTTTCTTGTTGTTCAGGTGGCGGGCCGAAGAAATGTCtcgttttttttccactttggaAAAGAAGAAGATTTTGAGAGAAAGTTTGTGTCTGACGGCTTGAATActaagaaacaaagaaaaagtagCAAGATCGTAAAATAAGT

Function

GO: NA

KEGG:

id description
K13458 RAR1; disease resistance protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72447 lncRNA downstream 8076 811996 ~ 812549 (-) True G48926
XR_006251322.1 lncRNA downstream 186563 630786 ~ 634062 (-) True LOC122348399
TU72411 lncRNA downstream 241136 536102 ~ 579489 (-) True G48895
TU72309 lncRNA downstream 484040 309044 ~ 336585 (-) True G48825
TU72294 lncRNA downstream 512300 306421 ~ 308325 (-) True G48817
TU72458 lncRNA upstream 69473 899143 ~ 903900 (-) True G48936
TU72533 lncRNA upstream 116794 946464 ~ 947162 (-) True G48985
TU72560 lncRNA upstream 152669 982339 ~ 982762 (-) True G49004
TU72568 lncRNA upstream 166414 996084 ~ 996499 (-) True G49011
TU72588 lncRNA upstream 249293 1078963 ~ 1079192 (-) True G49023
XM_043243798.1 mRNA downstream 104413 663675 ~ 716212 (-) True si:dkey-172j4.3
XM_043243146.1 mRNA downstream 267231 546103 ~ 553394 (-) True gpr185b
XM_043245930.1 mRNA downstream 453230 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA downstream 453230 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA downstream 453253 362023 ~ 367372 (-) False si:dkey-171c9.3
XM_043243794.1 mRNA upstream 243 829913 ~ 879557 (-) False si:ch211-200p22.4
XM_043243788.1 mRNA upstream 243 829913 ~ 879557 (-) False si:ch211-200p22.4
XM_043243787.1 mRNA upstream 243 829913 ~ 879557 (-) True si:ch211-200p22.4
XM_043243792.1 mRNA upstream 243 829913 ~ 879556 (-) False si:ch211-200p22.4
XM_043243790.1 mRNA upstream 243 829913 ~ 879556 (-) False si:ch211-200p22.4
unassigned_transcript_1267 other downstream 539770 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 546127 270369 ~ 274498 (-) True G48823
TU72258 other downstream 606967 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 606967 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 796922 23604 ~ 23703 (-) True LOC122349836
TU72452 other upstream 50932 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 212338 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 340311 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 340311 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 1068413 1898083 ~ 1898826 (-) True G49309

Expression Profile