RNA id: TU72533



Basic Information


Item Value
RNA id TU72533
length 699
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G48985
representative True

Chromosome Information


Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 946464 ~ 947162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTGCCAGGGAACTAAACAAGTTTtgttactaaaactgaaataaaaaataaataaagctgaaatgttaaaaactaaatacaaaaagcacataacaaaatgactaaaatgcaAGCTAATATTATGTTTAGGTTTCAGTTTCTGAGCGCTTTTATCAATTATCACcagcaaatgaataaatgttgttccaaactggCACGACTTgcttgaaaaaacaacaacgttagtttttaataaatcatataatataCAATGTGTATATACAAATGATTgttacaaatacaataaaaaaagcatcaccTGAACTGTTGCCTATTGACACACCTTTTTGTATATGCATTTCTGAcatattaattttcaaaatataagaCCATACATAAGTCATACAATAATATTCGGATGTTTATTGAAAGCAAATGTTGTAACTGAACTGGCACAGTTATTGTATTACTATTGGTCACTCATTATTATTGTTCGCACCAGCTGATGTTCTGTATTTTGAGCGTAGGGAAGTATATTGGGCGTGAGTCTTCTGCATACTCTTTTGCTCCAGCAGCAGTTTTTGTCGATGAGTCTGCAGAGTGTCCTGCTGTTTTTTTAGAGCTAGAGCTCTCTGGAAAAGGAGTTCATGCTCCTCATGCAGGCTTTCTTTCTCCTGAAACTCTTTATTTATGTAAGACGTCAGGTAGCGAGATGCCTCc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72458 lncRNA downstream 42564 899143 ~ 903900 (-) True G48936
TU72435 lncRNA downstream 124026 819637 ~ 822438 (-) False LOC122348397
TU72447 lncRNA downstream 133915 811996 ~ 812549 (-) True G48926
XR_006251322.1 lncRNA downstream 312402 630786 ~ 634062 (-) True LOC122348399
TU72411 lncRNA downstream 366975 536102 ~ 579489 (-) True G48895
TU72560 lncRNA upstream 35177 982339 ~ 982762 (-) True G49004
TU72568 lncRNA upstream 48922 996084 ~ 996499 (-) True G49011
TU72588 lncRNA upstream 131801 1078963 ~ 1079192 (-) True G49023
TU72772 lncRNA upstream 222819 1169981 ~ 1220893 (-) True G49133
TU72875 lncRNA upstream 518027 1465189 ~ 1468013 (-) True G49186
XM_043243109.1 mRNA downstream 3339 927412 ~ 943125 (-) True si:dkey-183c6.8
XM_043244976.1 mRNA downstream 48785 895085 ~ 897679 (-) True vbp1
XM_043243084.1 mRNA downstream 57506 880586 ~ 888958 (-) False zgc:162171
XM_043243083.1 mRNA downstream 57506 880586 ~ 888958 (-) True zgc:162171
XM_043243795.1 mRNA downstream 66905 848652 ~ 879559 (-) False si:ch211-200p22.4
XM_043245593.1 mRNA upstream 11308 958470 ~ 961382 (-) True cideb
XM_043245510.1 mRNA upstream 20959 968121 ~ 970747 (-) True dhrs4
XM_043244539.1 mRNA upstream 52715 999877 ~ 1007547 (-) True ajuba
XM_043245375.1 mRNA upstream 67757 1014919 ~ 1025201 (-) True mmp14a
XM_043244833.1 mRNA upstream 93760 1040922 ~ 1046317 (-) False zgc:153151
TU72452 other downstream 62653 880602 ~ 883811 (-) False zgc:162171
unassigned_transcript_1267 other downstream 665609 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 671966 270369 ~ 274498 (-) True G48823
TU72258 other downstream 732806 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251388.1 other upstream 94846 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 222819 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 222819 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 950921 1898083 ~ 1898826 (-) True G49309
TU73048 other upstream 954900 1902062 ~ 1904331 (-) False LOC122348471

Expression Profile