RNA id: TU72560


Basic Information

Item Value
RNA id TU72560
length 424
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G49004
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 982339 ~ 982762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgttcagtaacaaaaatgtattttgaagaacatttctCAACATTTGACAAGTACCAAAGTCTCCCTAAATGCAACGTACCTGTGGAGTGTGTCTTacaaacaaaatgtcaaaatgaacatcaacataatgtaaaaaagcacacaatatgcatgtcaaaaaaaaaatacattctggtaccaaatgaaaagaaaagtcaCATTCTTAAAGCAAACTTTGAATTATTAATGCAAAGTTGCATGAAACATCCCTGgttatgtgtgcatatatttctttaataagcAACTTAAAGCCATGCAGACATTTGAttaacaaaatcaaataaatataactatataggGCCATCAAATCTAAGCGTTACTATAAGCACTTAATTTAAGAACTTATGATATGTGAGCCTTTTTGAGAGGAACGCTTGCTTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72533 lncRNA downstream 35177 946464 ~ 947162 (-) True G48985
TU72458 lncRNA downstream 78439 899143 ~ 903900 (-) True G48936
TU72435 lncRNA downstream 159901 819637 ~ 822438 (-) False LOC122348397
TU72447 lncRNA downstream 169790 811996 ~ 812549 (-) True G48926
XR_006251322.1 lncRNA downstream 348277 630786 ~ 634062 (-) True LOC122348399
TU72568 lncRNA upstream 13322 996084 ~ 996499 (-) True G49011
TU72588 lncRNA upstream 96201 1078963 ~ 1079192 (-) True G49023
TU72772 lncRNA upstream 187219 1169981 ~ 1220893 (-) True G49133
TU72875 lncRNA upstream 482427 1465189 ~ 1468013 (-) True G49186
TU72908 lncRNA upstream 514561 1497323 ~ 1517408 (-) True G49210
XM_043245510.1 mRNA downstream 11592 968121 ~ 970747 (-) True dhrs4
XM_043245593.1 mRNA downstream 20957 958470 ~ 961382 (-) True cideb
XM_043243109.1 mRNA downstream 39214 927412 ~ 943125 (-) True si:dkey-183c6.8
XM_043244976.1 mRNA downstream 84660 895085 ~ 897679 (-) True vbp1
XM_043243084.1 mRNA downstream 93381 880586 ~ 888958 (-) False zgc:162171
XM_043244539.1 mRNA upstream 17115 999877 ~ 1007547 (-) True ajuba
XM_043245375.1 mRNA upstream 32157 1014919 ~ 1025201 (-) True mmp14a
XM_043244833.1 mRNA upstream 58160 1040922 ~ 1046317 (-) False zgc:153151
XM_043244832.1 mRNA upstream 58160 1040922 ~ 1046317 (-) False zgc:153151
XM_043244831.1 mRNA upstream 58160 1040922 ~ 1046317 (-) False zgc:153151
TU72452 other downstream 98528 880602 ~ 883811 (-) False zgc:162171
unassigned_transcript_1267 other downstream 701484 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 707841 270369 ~ 274498 (-) True G48823
TU72258 other downstream 768681 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251388.1 other upstream 59246 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 187219 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 187219 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 915321 1898083 ~ 1898826 (-) True G49309
TU73048 other upstream 919300 1902062 ~ 1904331 (-) False LOC122348471

Expression Profile