RNA id: TU72588



Basic Information


Item Value
RNA id TU72588
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G49023
representative True

Chromosome Information


Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1078963 ~ 1079192 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTACTCCCTGCTTATGGTTACTATCGTTAGTGGCAGGTGCAGATACTATTTTGTGTAGCCTACTTAATAAAACGTTTAATTGTGCTAACAAGGGTGATTACCAAACGCCACTACGTACTAGAAGGGCATTTGCAAAGCATTTTAGAGTCTCCCAGCCTTCCTCGCGTGACCGTATTACCGAGATGTTTAAGAAAGAGGCGACTGAAAAATATCGTTTGGCTGAGGTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72568 lncRNA downstream 82464 996084 ~ 996499 (-) True G49011
TU72560 lncRNA downstream 96201 982339 ~ 982762 (-) True G49004
TU72533 lncRNA downstream 131801 946464 ~ 947162 (-) True G48985
TU72458 lncRNA downstream 175063 899143 ~ 903900 (-) True G48936
TU72435 lncRNA downstream 256525 819637 ~ 822438 (-) False LOC122348397
TU72772 lncRNA upstream 90789 1169981 ~ 1220893 (-) True G49133
TU72875 lncRNA upstream 385997 1465189 ~ 1468013 (-) True G49186
TU72908 lncRNA upstream 418131 1497323 ~ 1517408 (-) True G49210
TU72935 lncRNA upstream 527679 1606871 ~ 1607083 (-) True G49231
TU72943 lncRNA upstream 619257 1698449 ~ 1698762 (-) True G49239
XM_043245244.1 mRNA downstream 128 1062516 ~ 1078835 (-) True slc7a8a
XM_043245245.1 mRNA downstream 18574 1055583 ~ 1060389 (-) True gmpr2
XM_043245243.1 mRNA downstream 23787 1049849 ~ 1055176 (-) True si:ch211-216p19.6
XM_043244833.1 mRNA downstream 32646 1040922 ~ 1046317 (-) False zgc:153151
XM_043244832.1 mRNA downstream 32646 1040922 ~ 1046317 (-) False zgc:153151
XM_043243869.1 mRNA upstream 63987 1143179 ~ 1146326 (-) True txn
XM_043243870.1 mRNA upstream 68293 1147485 ~ 1151598 (-) True ptgr1.2
XM_043243874.1 mRNA upstream 72732 1151924 ~ 1155410 (-) False ptgr1.1
XM_043243873.1 mRNA upstream 72732 1151924 ~ 1155410 (-) True ptgr1.1
XM_043243875.1 mRNA upstream 123203 1202395 ~ 1212213 (-) True nat8l
XR_006251388.1 other downstream 32646 1042008 ~ 1046317 (-) False zgc:153151
TU72452 other downstream 195152 880602 ~ 883811 (-) False zgc:162171
unassigned_transcript_1267 other downstream 798108 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 804465 270369 ~ 274498 (-) True G48823
TU72258 other downstream 865305 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72774 other upstream 90789 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 90789 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 818891 1898083 ~ 1898826 (-) True G49309
TU73048 other upstream 822870 1902062 ~ 1904331 (-) False LOC122348471
TU73049 other upstream 822870 1902062 ~ 1904143 (-) False LOC122348471

Expression Profile