RNA id: TU72908


Basic Information

Item Value
RNA id TU72908
length 844
lncRNA type read_through
GC content 0.47
exon number 2
gene id G49210
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1497323 ~ 1517408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatatatatatatatataaaaacatcagttaTATTAGCATAGAAGTAGTACTCATAGAATAAGAAGTAGGAACATTAAAATCTGTACTTTTAAAGACTTTTCATCTTTAGGATCATCATAATTCATTCCTCTTCAGCGTTGGACAGTATGACTTCAGTCTGTTGGTCGATTGACAGGGGGCTCAGGTCGGgccagagagaaacagagccAGTTCTGGAATGACGGTAATGAAGGATGTACGTGTCTGACTGCGAGTGCGCGCATGTGTGTCACCCCATGCAGGTATGCTTCGCATGTCGAGGCCGATGATCCCGGGGCATGAGGAATAGAAAGAAAAGATGCAGAGAGGCAGACGTGTGAGAAGCGTGTATGAAGCGTATGAAAGAGTAGGACGCATGTGAGAGGTacttattttttcctcttttataTCTCACTCgtttgtgtgtgatgtgtgcTTCAGTGTTTATCAGATATCTACATATGGACAGGCTGTCGTTCGTGTGCTTGTGACGGTAGTGTCTGCGcggtgtgtgagcgtgtgtgcgtTTTAAGACGGAGATTGAGGCATTGATTGGTTCCCAAGTCAGGTAATTATTGTGTTTTACAGTGTTGTAtcgttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtgtgcgtgtttgtgtgcggTTTCTAGGTGGTGTTGGCAGCACTGGACTCTGACTGGCTCTTGGTCGTGTTCTCTCGCTCCTGCAGGTTCTTCTGGTTTCTGCTGGCCTCGGTCAGACTCTGCAGCCGCCGCTCCTGCAGATCCTCCAAGTTCCTCCACAGCTCGGctcgctctttctctttcttcagcTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72875 lncRNA downstream 29310 1465189 ~ 1468013 (-) True G49186
TU72772 lncRNA downstream 276430 1169981 ~ 1220893 (-) True G49133
TU72588 lncRNA downstream 418131 1078963 ~ 1079192 (-) True G49023
TU72568 lncRNA downstream 500824 996084 ~ 996499 (-) True G49011
TU72560 lncRNA downstream 514561 982339 ~ 982762 (-) True G49004
TU72935 lncRNA upstream 89463 1606871 ~ 1607083 (-) True G49231
TU72943 lncRNA upstream 181041 1698449 ~ 1698762 (-) True G49239
TU72945 lncRNA upstream 181898 1699306 ~ 1699636 (-) True G49241
TU72947 lncRNA upstream 183985 1701393 ~ 1702669 (-) True G49243
TU73073 lncRNA upstream 428353 1945761 ~ 1952332 (-) True G49322
XM_043243442.1 mRNA downstream 21951 1473357 ~ 1475372 (-) True arl2
XM_043243295.1 mRNA downstream 49466 1439114 ~ 1447857 (-) True rcor2
XM_043245357.1 mRNA downstream 111141 1382135 ~ 1386182 (-) True adad2
XM_043245358.1 mRNA downstream 111184 1382135 ~ 1386139 (-) False adad2
XM_043245421.1 mRNA downstream 117232 1374479 ~ 1380091 (-) True LOC122349396
XM_043245925.1 mRNA upstream 365622 1883030 ~ 1890771 (-) False LOC122349772
XM_043245924.1 mRNA upstream 365622 1883030 ~ 1890770 (-) True LOC122349772
XM_043243928.1 mRNA upstream 384182 1901590 ~ 1907162 (-) True LOC122348471
XM_043243926.1 mRNA upstream 390065 1907473 ~ 1921042 (-) True LOC122348468
XM_043243927.1 mRNA upstream 390065 1907473 ~ 1921037 (-) False LOC122348468
TU72774 other downstream 276430 1169981 ~ 1220893 (-) False G49133
TU72777 other downstream 276430 1169981 ~ 1220893 (-) False G49133
XR_006251388.1 other downstream 451006 1042008 ~ 1046317 (-) False zgc:153151
TU72452 other downstream 613512 880602 ~ 883811 (-) False zgc:162171
unassigned_transcript_1267 other downstream 1216468 280782 ~ 280855 (-) True trnan-guu_33
TU73047 other upstream 380675 1898083 ~ 1898826 (-) True G49309
TU73048 other upstream 384654 1902062 ~ 1904331 (-) False LOC122348471
TU73049 other upstream 384654 1902062 ~ 1904143 (-) False LOC122348471
TU73050 other upstream 384654 1902062 ~ 1904143 (-) False LOC122348471
unassigned_transcript_1270 other upstream 2767001 4284409 ~ 4284499 (-) True trnar-ucu_8

Expression Profile