Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000082 |
| length | 919 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 2 |
| gene id | XLOC_000046 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 2101541 ~ 2217861 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048747 | muscle fiber development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0007517 | muscle organ development | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9582 | Predicted to enable RNA binding activity. Acts upstream of or within animal organ development; chordate embryonic development; and muscle cell development. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including chordo neural hinge; gonad; nervous system; pectoral fin bud; and solid lens vesicle. Used to study myotonic disease. Orthologous to human MBNL2 (muscleblind like splicing regulator 2). |
| ensembl_id | ENSDART00000128187 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002808 | lncRNA | upstream | 77896 | 2023409 ~ 2023645 (+) | True | XLOC_000044 |
| TCONS_00003015 | lncRNA | upstream | 95909 | 2001716 ~ 2005632 (+) | True | XLOC_000043 |
| TCONS_00000077 | lncRNA | upstream | 201698 | 1898909 ~ 1899843 (+) | True | XLOC_000039 |
| TCONS_00000073 | lncRNA | upstream | 309018 | 1790772 ~ 1792523 (+) | True | XLOC_000036 |
| TCONS_00000071 | lncRNA | upstream | 370057 | 1730392 ~ 1731484 (+) | False | XLOC_000036 |
| TCONS_00000101 | lncRNA | downstream | 166960 | 2296591 ~ 2299546 (+) | True | XLOC_000048 |
| TCONS_00003016 | lncRNA | downstream | 1589035 | 3718666 ~ 3720603 (+) | True | XLOC_000053 |
| TCONS_00000113 | lncRNA | downstream | 2468429 | 4598060 ~ 4680477 (+) | True | XLOC_000056 |
| TCONS_00002809 | lncRNA | downstream | 2771829 | 4901460 ~ 5030155 (+) | True | XLOC_000057 |
| TCONS_00003018 | lncRNA | downstream | 3181848 | 5311479 ~ 5313595 (+) | False | XLOC_000059 |
| TCONS_00000081 | mRNA | upstream | 74441 | 2025085 ~ 2027100 (+) | True | XLOC_000045 |
| TCONS_00000080 | mRNA | upstream | 101184 | 1941031 ~ 2000357 (+) | True | XLOC_000042 |
| TCONS_00000079 | mRNA | upstream | 178288 | 1915967 ~ 1923253 (+) | True | XLOC_000041 |
| TCONS_00000078 | mRNA | upstream | 190160 | 1904419 ~ 1911381 (+) | True | XLOC_000040 |
| TCONS_00000076 | mRNA | upstream | 201693 | 1896737 ~ 1899848 (+) | False | XLOC_000039 |
| TCONS_00000095 | mRNA | downstream | 61083 | 2190714 ~ 2214400 (+) | True | XLOC_000046 |
| TCONS_00000096 | mRNA | downstream | 92732 | 2222363 ~ 2240119 (+) | True | XLOC_000047 |
| TCONS_00000097 | mRNA | downstream | 130776 | 2260407 ~ 2299553 (+) | False | XLOC_000048 |
| TCONS_00000103 | mRNA | downstream | 172330 | 2301961 ~ 2394973 (+) | False | XLOC_000050 |
| TCONS_00000105 | mRNA | downstream | 172343 | 2301974 ~ 2409126 (+) | False | XLOC_000050 |
| TCONS_00000069 | other | upstream | 308170 | 1718611 ~ 1793371 (+) | False | XLOC_000036 |
| TCONS_00000070 | other | upstream | 369215 | 1719207 ~ 1732326 (+) | False | XLOC_000036 |
| TCONS_00000068 | other | upstream | 378384 | 1717697 ~ 1723157 (+) | False | XLOC_000036 |
| TCONS_00000067 | other | upstream | 383014 | 1712153 ~ 1718527 (+) | False | XLOC_000036 |
| TCONS_00000061 | other | upstream | 525978 | 1575483 ~ 1575563 (+) | True | XLOC_000032 |
| TCONS_00000094 | other | downstream | 61069 | 2190700 ~ 2214397 (+) | False | XLOC_000046 |
| TCONS_00000098 | other | downstream | 142630 | 2272261 ~ 2288773 (+) | False | XLOC_000048 |
| TCONS_00000099 | other | downstream | 145974 | 2275605 ~ 2275742 (+) | True | XLOC_000049 |
| TCONS_00000100 | other | downstream | 157218 | 2286849 ~ 2299546 (+) | False | XLOC_000048 |
| TCONS_00000102 | other | downstream | 172327 | 2301958 ~ 2302623 (+) | False | XLOC_000050 |
