RNA id: TCONS_00011125


Basic Information

Item Value
RNA id TCONS_00011125
length 1386
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_005340
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22443640 ~ 22445101 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATATCCAGATGCAAAAGAAACCAAACACGCAGCAAAATATTATCTAAAACTTGTTTATGCTTCAAAACCATCCACACCCATCAGAGTTTGAACAAAATTGATAAATAACGGACATATAAATACGCTAATAAATAgaggaacaaaatataaaagagAGATCATAATTGTGGAGTCTTCATCTCTCCTACATTATACAGTGAAAACAGACCAAGTGCATTCAAAtggatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacataaaaaccaGTAAAAACCATTTAAGACTTAAAAAAGAACTCATACACAGTGAACTAGGGATTCTCTTGCAATAAATAgtccaaaccaaaaaaaaaaaaaaacatatgccttGTTCTCCAATGCCTAGCCGTTTGCCAAAACAGGCGGATAATGATGCTAACTGCTACTTGAGGTTTCATTTCTGTGATGTCCTTTACATTAGACACAACAGGAAGTGACATTGTCTGCCTGTGGACAgtcgaaatgtgttgaagaacATCAATCCACCGATGTAAAGGAGCGATTTAGGCAAAGAGAGGAGAGGACAGAAGTGGCTCCTTCAGAAAACTAGACGCACGGAGAAAAAGACGAGAGCAAATTATAGGGAATGTTCTTGTTCTTGAGAGTCAACAGATGTGAGATCTGAACAAATCCATCTGTTTAGCACTTCTTGGGTCCCCACGCTGACGTTTGTTTCGGTGTTATTCCAGATCCAAACGTTGGGAACTCTTCAGCACTGCTCACGTCTGGTGCCTGGACGtcacaaataaagaataaaaagaaacagATAGATTATGATTAAAGCTTTGTCAACAAAATAATCACTTCTTTTAACTTTAGACTGATTTGTTTAAGAgtatttttggtatttttacatttaagtagCGTTGGGTGATAAAACAATGATCACAAATCAATTCTCATTCTCCAAATGCTTCATACTGTTTTCAAAAAGTTGTTTCTTCTTAGAAATGACCTTGTTGCCTTGTGCGTTCCAGGGGGCGTCCCGTACGACGAAGCCTTTAGCCAGGGCTCTGTTGTCCTCGTCATTTCCTCCAGTCCCCATCGTCTTTGAAGGAGGCTTCATATAAGCTGCCATAGTCTCTGTTTCTGTGACGCTCAGCATCTAAGAGGCAAGATGGGAGAATGAGTTGAGCAGATGGTCAATGGTGTTGTCAACATTCTCCGGCAGTCCTGTGACAGTCACCTTGTTTGGGTCCTCAGAACCCGGCTGAGGAAACCGTATATCAACCtggaataaagaaaataactcaaAAGGCGCCTCTAAAGCAAATACtctatgtatacagttgaagtcagaattattagccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011124 lncRNA downstream 162937 22270500 ~ 22280703 (-) True XLOC_005337
TCONS_00011123 lncRNA downstream 222770 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00011122 lncRNA downstream 222770 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010240 lncRNA downstream 222770 22164030 ~ 22220870 (-) True XLOC_005335
TCONS_00010222 lncRNA downstream 1859201 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010805 lncRNA upstream 99631 22544732 ~ 22559642 (-) False XLOC_005344
TCONS_00011126 lncRNA upstream 109375 22554476 ~ 22559775 (-) True XLOC_005344
TCONS_00010255 lncRNA upstream 545139 22990240 ~ 23009312 (-) True XLOC_005346
TCONS_00010259 lncRNA upstream 682543 23127644 ~ 23129458 (-) True XLOC_005347
TCONS_00010806 lncRNA upstream 926072 23371173 ~ 23371845 (-) True XLOC_005349
TCONS_00010248 mRNA downstream 42641 22360959 ~ 22400999 (-) True XLOC_005339
TCONS_00010247 mRNA downstream 64219 22359700 ~ 22379421 (-) False XLOC_005339
TCONS_00010244 mRNA downstream 88188 22311127 ~ 22355452 (-) False XLOC_005338
TCONS_00010243 mRNA downstream 88210 22310365 ~ 22355430 (-) False XLOC_005338
TCONS_00010245 mRNA downstream 88210 22313761 ~ 22355430 (-) False XLOC_005338
TCONS_00010249 mRNA upstream 5447 22450548 ~ 22509072 (-) False XLOC_005341
TCONS_00010250 mRNA upstream 6686 22451787 ~ 22509069 (-) True XLOC_005341
TCONS_00010251 mRNA upstream 65914 22511015 ~ 22524388 (-) True XLOC_005342
TCONS_00010252 mRNA upstream 83649 22528750 ~ 22540943 (-) True XLOC_005343
TCONS_00010253 mRNA upstream 200223 22645324 ~ 22670279 (-) True XLOC_005345
TCONS_00010246 other downstream 88235 22350632 ~ 22355405 (-) True XLOC_005338
TCONS_00010242 other downstream 205636 22231146 ~ 22238004 (-) True XLOC_005336
TCONS_00010235 other downstream 763020 21672949 ~ 21680620 (-) False XLOC_005333
TCONS_00010232 other downstream 873741 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010220 other downstream 1859201 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010257 other upstream 581775 23026876 ~ 23068605 (-) False XLOC_005347
TCONS_00010269 other upstream 2457570 24902671 ~ 24904931 (-) True XLOC_005358
TCONS_00010293 other upstream 3695104 26140205 ~ 26140321 (-) True XLOC_005374
TCONS_00010331 other upstream 5213960 27659061 ~ 27659175 (-) True XLOC_005395
TCONS_00010337 other upstream 6055020 28500121 ~ 28500239 (-) True XLOC_005399

Expression Profile

//