RNA id: XM_043243794.1


Basic Information

Item Value
RNA id XM_043243794.1
length 8488
RNA type mRNA
GC content 0.43
exon number 20
gene id si:ch211-200p22.4
representative False

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 829913 ~ 879559 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCGCCAGCGCATTCTTTAGCAAACCGGAATAACGTAGAGCTGACAGTTCAAACCACAGCCTCAGACGCGGCGTCAGACGGGGGGTTCGCAGTTACACCACCCCTCTTTCGGTCCCGAGCAACTCGACGTCTCTCGGTCTCACCAAAGGAGGAACCGTGTCGTTTTCGCGGACTAAAGGGAGACTTTCAGCGGGACGGAAGGGAAGAGAACCAGGCATCCGGTTAGACGCGCTGGCTCACCGGGCTGGAGTCCAACTTGAGCCGGACACTTTCAGCTATCTTCGTCGGGATGCGCGCTGGACTTGTTTTTGACAATATTTACCCGTCTTTTTGAAGATTATGGTCTATCTAGGAATCGATTAGGCTCGAGCGGGACTGTTTTTGTCAGTAACGTTAGTTGTCCAATAGACGAAAGCTGGAGCGCTAGTTCAAGCTCAGATGTGATTTATCTACTCAGCTGGCTGGGCAGATAGTTTAGGTCGTCGATTAGATAAGTCGCCTGATTATATTCCTTACATAATACCATTGTTTTGTTACCGgaatagttacatttttatgttaatccAGCTTTCTTAACGTCTCTTTGCCAAGTCTCACATAGGGTTTGGTTTGTGTGTCTATGCATATTTCTCGCAAGCAAACCTGTCAGAGTTCTTGACTGGTTAAGTCTTTGTTCCAGTATAATAGTAGGTTTATAAAGGTAGGAAAAACCACAGAACAGATTTGCCTATCTAATCTAAAGCTAGTCTGTGGGTGCTTCCTATATCCATTTCGTTTTCTTTCAAAAGGTCTTTATTGGTGTGGCTCAAGCTGGCGGACAGGTGATATTTTTTGTCTGAATCCTCTGAGCTGGCCTGACTGATAGCTATGACATTTTCCAACAGTTGTTTTGTATCTTCAGACTTCAATATTTCCAGTATCCGCTCTTGGTGCCAACGTTGTATTAGTAATATTAGCTAACAAAAGCTCAGTTCGCCCCTCCAAATTAGTTACGGCATATCTAGTTGTGACATTTTTACTAGTTAGATCAagttttccttcctttttttttataactgtatAAATTAGTGCCAGTTGACTTGGTGGCTGGTTCGAAACGTATCAAACTCAAcagtttgtgtatttttgtaaaaccgTGGAAAGACGCACCTTTGCAGCAAGACCAGGTCAAGTTTAGCGGTCATTTTTTTTCGTATCTCAGAGTTGAATCAAAAATGTCAGGACAGTCCATCACAGATCGCATCGCAGCGGCCCAGCACAGCATGACTGGGTCGGCCATCAGCAAAGCCGTCTGCAAGGCCACAACGCACGAAGTCAGTGGACCCAAAAAGAAACACCTCGATTACTTGATCCACTGTACCAATGAGATGAATGTGAATGTGCCCCAGCTGGCCGACACTCTGTTTGAAAGAACCACCAACAGCAGCTGGGTTGTGGTCTTCAAAGCGCTCATCACCACACACCACCTAATGATGTATGGAAATGAGCGTTTCATTCAGTATCTGGCCTCAAGAAACACGCTGTTCAATCTGAACAATTTCCTTGATAAAGGTGCATTGCAAGGCTATGACATGTCTACGTTCATCAGACGGTACAGCAGATATCTCAATGAGAAGGCCCTTTCCTATAGACTGGTGGCTGTGGACTTCACCAAGATGAAGAGAGGTATTGATGGAGTCATGCGCACCATGAACACAGAGAAGCTGATCAAAACGTTGCCTATCATTCAAAACCAGCTGGACGCGCTGCTGGATTTCCAGGCTAACCCTAATGAGCTGACTAACGGAGTGATCAACGCTGCCTTCATGCTGCTCTTCAAAGACTCCATCCGTCTGTTTGCTGCCTATAATGAGGGCGTTATCAACCTGCTGGAGAAATATTTTGATATGAAGAAAAACCAGTGTAAAGATGCCCTGGACATCTATAAGAAGTTTCTGTACAGGATGACCAAGCTATCAGAGTTTCTTAAAGTGGCTGAGCAAGTTGGGATTGATCAGGGTGACATCCCAGATCTCACTCAGACAACTAGAGGATCTTACCTTGCTCCCAGCAGTCTCCTGGAGGCTCTTGAGCAGCACCTGGCCTCTCTGGAGGGAAAGAAAACCAAGGAGCTTTCCGCTGACAACAGAGCCAACACTCTGTCCAACGCGGTGTCTTCCCTGTCCAACACGGGCATGTCCTTCTCCTTCTCATCCAGCAGGATGGACGAGAAGGAGAAACAACAGGCCCTGGAGGAGGAGCAAGCCCGTCTGCAAGCTCTCAAGAACCAGCGTCTGAAGGAGATCGGCATGCAGACCCCCTCTGCCTCTCCCAGCACACAGTCTGTGGGTAGTGCCAACAACCACACTGCGGGCATGGACCTGTTCACAAACACCACAAGCCCACCCTCGACAAACAGCATGCCAAACCTCAACAGTGACTTGTTTGACCTCCAGCCTGCCTTCGTTCCTGCTGTGCAGAGCACTCCTATCTCCACCGCCAGCAGTGCCTGGGGAGgttaTGATGCATTAGGAGACTTGTTGAAGCCCACGGTGACGGTTCACACTCAGGCGCCGGTCATGGCTCATCACACAGGCAGTAAACTGTTGGCCAATGACCTGGATTCATCTCTGGCCAACCTCGTAGGCAACCTGCAGTTTGGGGGAACACCAGGCAAAAAGTCTGATATGCAGTGGACTCAGCCTGGAGAGAAGAAGCTGACCGGTGGCACTAACTGGCAGTCAAAGACAATGAGCAGCACCACTGCCTGGAGCCCTGCCCCCTTGCCACCTGCTGCCATGCCACCTGCAGCCATGCCCGTGCCACACATgCAGACTGGAATGTTCTATACTAGTTATGCTCCTGCTCCCATGGCGTTTCCCATGACAACACCTCAAGTGCCTGTGTATGGAATGGTCCCTCCTCAGCTGGGACAGATGGGAGGGGTTCCAGTAATGACCCAACAGCCCATGTTGTACAACCAGCCTGTTCTCAGACCCACTAACCCTTTCAACCCCATCCCTGGAgcccagATGCAGTTCATGTAAGTAGCACTTAAGCAGAGCGCCAAacaggacagctgaaaagaacaAGAAGCTAGTGAGAGGAGGATCCGACTACCACCAAATAAAAGGAGATCGAGACCAAAAGAAAGAGCGTGCATATGGAGAGGAATGTGTTTGTGTCAAGAATGCTTACCTCACTGTCTGAAACGGCtcacccaacacacacacacacacacacacacacacacacacacacacacacacacacacaccccagaTGAGAGCGCATACACTGTCATTTTTCATCTGAGGTTCATTTCTTTCCTGGGGCACAGTGTCTACTGGCAGGTGTTATACATCATAGAAATAGTGGATTTTATTGCAGATATTAAATTACCATGTACATAgcactctttttctttttttttattcctaattaatataaattagatCTAAAGCCCAACACAATGGACTTCCTGTTACTGTCATCTTTTGCTTCATTACGAAGATGCCCATGCTGAGTTCGGGAAAACGGTGAATGTCAAAGTAAATCCCCTGAATAGTGCAGCTTACTACAtcataaacatgtttaaatggCTCATTAACACAATGCCCCGGCTTCTCATTTCAGAACAAGGAAAGAATTTGACCCCTTATGTAAGGTGCCCTGCACCCTCAAGCACTTTacacatgcatttatgtgtAACCTAATATATAACATTGAGCTGGTCTCTTATAACTACAACGTTAGTCGTCTAATGGTAACAGATAACGTTACTGTTACTGCTGGTTACTGTTCAAAATGGTCAGTCAATccttatttgtttataatgttttaaaggtTTCCGTTTCAGTCGTGATGGTGGTCTTGCACATACATATGCACGCATTGGTGTTATTGAGCCACATGAAGAGCCCTCTCTCACTGGCCTCCCACCTTGTTTTGTCACTCCAAGGACACTGATAAAAACATATCTGCTCCCGCTCTTCTGTGTTAACCAAACATATCACGCATTTATGACTACATCTCACACTCTAAACCCACTCCCCATGTACCACCCTCCCTGGGAGCGGGTGACCGGAAGCATCGGAGAAGGGTACAGGGCATGTGGTGTAGCcctattcaaaaaaaaaaaaaaatctgtttttaatgagGGTTTTGTTTAagcctatgttttttttttttttttgtttttgttgtttttctagaaagcatgttatatatatatattattattattattgttattatttttaatttttttcagaaaatgacaTGACTCATGATCTGTTTTATGTTGCCAAATTATGTACATTTGTGATTCAAGAAATGCCATAAGCTAGCTCTTGTACTCTGCGCCTGACAGCGCGGTTCGTTCTCTGAAGGACGTGCGTATTGGTGTTTGCCAACTTTGGAACCAAAATCAATAGCTAAAATCTacttttagtctgtttttgtGCAGTTCCTCGCAATACGGGGCGCTGTTAACAGGgtatctttattttttgcttgtgCAGCCAAAGTATTTTCGGTCTTTCTGAAATCCCTTTAACCCTTTCTAGAACTTCAGCTTTCACATCATCCCATAATTCCTGCTTTGTTTCTTCGTGCtacatttagtttttccttCTGCATATACTGATGGAACATTACTGGAGATGTGGAGTGGTTGCAGTTGTGCTATAGTGCTATAATGAGCTCCAAGAAGCTGTGCTTTACagtgaattttttatttttattttttaagtcttactgatttttaaaataaaatggcttcATGGAGCTTAttgcccctttttttttttttttttttttttttttttttttatgatcacTACCTTTCGCTGGTAAGGTTTTGGAACGTAAACACACagcaacaaacatttaataatttattggtAACAAATAATAATCCTTCCTGTAAGCAATGCAGTTCTTCTGCAGTGTTTAGCAGAATAGTTGCCAAGCAATGCAGATTTAGTAATATTGATATAATGAGGTCACAGGTGTGCGTTTAAAGAGCTGATCAAGGAATGGAATTTTCCGTTTTGTAAGagattgtgatttttttgtagTGGCACGTGTTATAAAGAGGTTATGACTTGTTTATAACAGTCTGTCTTAAATCATCAGAATGGTTTTAGAAATGTGTAAATAAGACATCCTTTCATCGGTCACTTGCACAAGGTTCAGCTCACTTACAAAGATaatccacccaaaaatgaaaattctgtcatcatttacccactTTGAATTAATTCCAACCCTGCATGCACTTATTTCTTCTGCTGGACATGAAAGCgtgcttttgtgtttcacagaaggtCAGACATACGCGTTTGGAGCTCCGTTAGGGTGAATAAATGCTGACAAAATCTTTCCTTTTTAATTCTGAATCTGACTTTCCATCAGTTCAAGTGTGGTCATTGCTTTTGTGTTGTTAAAGCCATCCTCTACTGCAAGTTTTATATTGTTGCTGTAATGCGTGTGACCGCCTGCCCTTCTGTTTGTAGAAACAATGTGCATCGTGTTTCTCTGCTTGCTTAATTCTGTGCGAGTGCGCGAGTCGGTTACTAATTCTTCACTGAGCGTCTCTTAACATGCTTGTGAGTTTATTCTCCTTTGAGCGCCGTCAGGGGGTCCGACAGGTTCAGACTGAACGCTTTTTATATGCAGGCTCAATGTTGATGCTCTCTCTGGGTTTGCAAGGTAACGGGGCGCAGAGGAGCGATGCTGTTTAATTAGGATCTATTCTATTATCCCGTCACCGGAGGCTTGAAGTGTGTGTAGCGAGAGAGTGAATGTATGATTGTGAGCTTCAGGGAGGGTGAAAGATCTCAAGATGTACAAGGGTGCTATCATGAGCCAGGGTTTCCATGGTAATCTCCAGTTTCTGGTCCTTGGTACAGGTCTGTGAGCACAGCAgcatttgtcttcttttttttttttaatattattaaaaacccTGCATGCATTAACAGCCCATGCTGTGGTAAAGACTGTCTGAAGATGCAAGTTTCTTTGGCAACCTAGTGCTTTTGGATAACCTATAGGCTTGTTGACTTGTTTCACTGGCAACGGGTCATGATTGCTTTCTCTCTGACACACCAAAGGCTTTTTTTCGAACTTTGTTTTGCTGAGTTGAGGCGTTCAGGGAACgagctttcatttttgtttagaatCCCATGCTATGCACGGAAACGTTCTTGCTTTCACAGCTCCCCCTTGTGGTTACTGTTTGTCATCTTTTATATAAACAGCTGTTAGCGTTCTGTTAGCTGTTTATGGGGCGGTTGTGCACACAAAGCAAATGTCTGAGTGTATTGGACTCATCGCTCTACTTTCATCCTTTATTTTAGAGCTGAAGAGCAGCCAGCTCTGGTGTACTTCTAAACTACTTAGCCTGATTTTATACATCTCGGCTCGACTCATTAGCTGGCCTGGAATACTCAGCTCAGCAGCGGCCTTTCAGAATTGATGTGTCAGCTTGTGGCGCACGTCTCAGACCTCTAGTGGGGATTCTTGGTGTTCAGGGTCCTTTTCACCTTCGTGCTGTCATGGAGCTCTCCTGGCTTCTTTGgctttagtgtttttgtttgatgtGGGCTATTTGTCTGCTACACTTTTATTACCATCTTTTTGTCCTTATTTTCCTGTTACAGAgatatatgcagtatatttagaaatatgtaTTCGGTAGAAGCGCCATCATCCCTGTGTATCAGCCCAGGGGAGCAATGcagcaacaattttttttttcttttatccatTTATCATCTAATGCCACAAAAGGAGAACACAAAACCTCCATGTTTATGCCTATTTCCCCACTgtactattataattttttaattttttggtaatttatttatgcagaCCATAAGGAGTTTATCCAGCATggtgaaaatgaaaagcagaaaTTGTGGGATtgtgtttaacatttttgtctttcattttgtCTGACATTCATTCACATAAATAAAGTCCCTTTTTATTCCTGAGttgttggttatttttttttgtttggtttcattCTGTCTGTCATCCTATTCATTAAGTTTTATCCCAAGCAGGAAAATCACTGCCCTCGAGTTCATTTTAGGTGTCCGgctcttttgttttctcttctccGGCCTCTTGAAATTGCACTTCATTCCTGCCTCACGGCCCATAATGCAGGGTTTTTACAGTATGAACGCACGTTTTAAATACCTGGTCAAATTTTGTGTAGTGCCgtgttgtgttgttttctcGTCTGTCAATGTGATTTCTGTTGAATCTATTGCACGAGTTTCACTGCAACAGGAACCacctgatttttttctttgtagcaCTTTTTGACAGTTGACTCTGAAACAGGAAAATCAACCAATGTTTCTTTGTGTATCTCTTCTGTTTTAAGACCAACTTCAACTGTTTAGAAGTTGTCCAAACAGTGAAACGTGTATGTGGATGTGGTTATGATGTTTGGAAAAGGATGTACAGCAACACCTGCCATATTGTGTTCCTTTTTTCCCCAATTTCTCACCAAGTCTTTGGCTGTTCGGTCCATCTAAAAGATAAAATGGTTCGGTGACCGTTTGCCATCATGGCGCGAAGGTAATTCCTGGACAATATGGCAATGCATTTCACTAGTTACTAGTTACTAAGTAACTAAATCTGGTTTGGGTCATTCACTTGCTCTCAACTCTTCTGAAGGTTGTGGTCTGTGATTTGAAGCTGTGACTAGTGATGTTCTCTtctatataaatgatttgagcTCCACCACGTTCTGTACCATTGGGGAAAAGGAATCAGACATGTCTGGTTGTGCTTGTACATCAGCGCTCTCAAGTCTGGTAGGACGCTTGTATCGGTTGTCAGCGAAACCTTTAATCTGTAACTAAACCTGAATCAAACACCCTCTTCTTCGACTTTTCATCTGCGACTGCCTTTGGTTTCCCCGTGAGCTTCATGAACCATGCGGCACTGGTTGAAGTCAATGATCTTATGATACCAGTCTCTCCTGAACTGTCGTTTGTACGCCTGCAATGAGATGCTCAACCCAGGACCAAGAGACCTGATGGATTTAACTCCATTTTCTTTCGATCGCTTTATAATTTGTACCTGTtttcttgcatgtttttgtatCTGACATGCCTGGGAAAGTTTCACAGTTCCATGTAACGTTTGCAAAGTTCTATTAAATATGGTGCTGTTTTTTAGTAAGCAGTTGTTGTCGTAGTGATGGACGGGTTCTGTGTATAtctgttattttttatgatttatcagTGGTTGGTTGTGCTGATCTGGTATGTTATATTCCTCCTTGCGATTTTTGCTTGAGTCAGTTTTTGTAagttctttcattctttctgtctCGGTCTCTGTTTTGTTGTCTGTATTTGTGAAGAAAATTTATGGTTGCAAGCCTCTAACCTGAACCATGAGTGAATGCCTTGTGAATAAATGGATTTAACGCTCGCGCTCACCGGTTTCTTaataaaggacatttttaacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72435 lncRNA downstream 7475 819637 ~ 822438 (-) False LOC122348397
TU72447 lncRNA downstream 17364 811996 ~ 812549 (-) True G48926
XR_006251322.1 lncRNA downstream 195851 630786 ~ 634062 (-) True LOC122348399
TU72411 lncRNA downstream 250424 536102 ~ 579489 (-) True G48895
TU72309 lncRNA downstream 493328 309044 ~ 336585 (-) True G48825
TU72458 lncRNA upstream 19586 899143 ~ 903900 (-) True G48936
TU72533 lncRNA upstream 66907 946464 ~ 947162 (-) True G48985
TU72560 lncRNA upstream 102782 982339 ~ 982762 (-) True G49004
TU72568 lncRNA upstream 116527 996084 ~ 996499 (-) True G49011
TU72588 lncRNA upstream 199406 1078963 ~ 1079192 (-) True G49023
XM_043243797.1 mRNA downstream 243 820625 ~ 829670 (-) True LOC122348397
XM_043243798.1 mRNA downstream 113701 663675 ~ 716212 (-) True si:dkey-172j4.3
XM_043243146.1 mRNA downstream 276519 546103 ~ 553394 (-) True gpr185b
XM_043245930.1 mRNA downstream 462518 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043243084.1 mRNA upstream 1029 880586 ~ 888958 (-) False zgc:162171
XM_043243083.1 mRNA upstream 1029 880586 ~ 888958 (-) True zgc:162171
XM_043244976.1 mRNA upstream 15528 895085 ~ 897679 (-) True vbp1
XM_043243109.1 mRNA upstream 47855 927412 ~ 943125 (-) True si:dkey-183c6.8
XM_043245593.1 mRNA upstream 78913 958470 ~ 961382 (-) True cideb
unassigned_transcript_1267 other downstream 549058 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 555415 270369 ~ 274498 (-) True G48823
TU72258 other downstream 616255 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 616255 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 806210 23604 ~ 23703 (-) True LOC122349836
TU72452 other upstream 1045 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 162451 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 290424 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 290424 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 1018526 1898083 ~ 1898826 (-) True G49309

Expression Profile