RNA id: XM_043244534.1


Basic Information

Item Value
RNA id XM_043244534.1
length 3898
RNA type mRNA
GC content 0.45
exon number 5
gene id tnfsf10l
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 339825 ~ 358332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacagcccagTCCTCCAGCATTAGTGACTGCATGCGAGTGTGGGACAGACTCTACCCTCCCACGGCCGCTCTGCGCCAACAAGAAGGAGTTTATTCACCGTCCCGTTGCTGATTTCTATTTGTTTGTCACTAACCGCGTATCTACTCACGTCTTAGGAATGCCATGGCTACTCAGAACAACCAGGATTACTTCAGGTCGGTCAGCAGCGAGTCCACCACATACATGATGGTTCCGGCGAACGGCCGCGGTCGAGAGTCGCCGTCAAAGTTATGGATCGCGATGGTGGTGATAGTGGTAGTTGTGCTGCAGATCGCTTCGACCACCGGACTCTTTGTCTACTTAAACATGTCATTATCGCAGGTTAAAAATCAGGGGGTTACAGAAGAGCTGCGGTGCTTGGGCTTACTCAATGCCCTGGATAAAGACCGGGATATTCCCGAAGACCTGGCCCAACTGTTTGGAGAACCTTGCATCAAGCTAGCCGAGGGTATCAAAGCCTATATTTCCAAGgTTACTGACAGTATCATCTCCAAACAGGCTTTACACGAAGCAAGAGCCATGCCACATTCATATAATACATCAGGGTCAAAGTTTATGACCACAGTGACACAGCGACCATCAGCCCACCTGACCCTCAGCAGCCTGCAAGGTAGCGCTCAATACTTTTCTCCTCAAGCAGACCTGCACCAGTCTTGTCGCCACCCTGTACGTTCCTGGGCCAACCAGAGCTTTGGCGCCCATCTGCACAACATGACGCTGGCCAACGGACGCCTCCGCGTGCCACAGGACGGTCGTTACTACCTGTACTCCCAGGTGTACTTCCGTTACCCCTCTCCCAGCGAGGGCGATCAGAACAGCGTAAGCCACCAGCTGGTTCAGTGCATCTATAAGAAAACCTCCTACCTGAGGCCGATTCAACTCCTCAAAGGAGTGGGGACCAAATGTTGGGCTCCAGACGCAGAATACGCCCTTCACTCGGTGTACCAGGGTGGCCTGTTTGAGCTGCGAGCGGGCGACGAGGTCTTTGTGTCTGTCTCGTCTCCCACGATGGTGTACGGCGAGGACTCTTCTAGCTACGTCGGAGCTTTCCGTCTGGACCTGTAAGAGCATATCAGAGGAGCTAAACCGGGACTAGGTTACCTATCGGGTGGATCGTTTTGGGGCTGTGACCCAAAGACTTCATCGTTCAGCTTTCCTTTCTTTAAGACTCTGAATATGTGAAGGATGTGTGAATGAGAGACATTTCGGACAAGGTTGTTTCTTTTAAAGACAGAggaatgtatgtatattttttacagaTCACATCAAAGATGTGAATCTTCAAAACGGTAGCAAAACAGGAGAGACAAAAACTCACGCAGAGTGAATCAGTGCCAACGGCGAATAGGGTTTGACGTGTGAACTCCACTCACGCTCGTCCGCTGGAGGGGAATATTTCTGCGTACAGCGGATctaaaagagttttaaaaacagAGATATGAGAAGAGATGACAGCGGGAATGTGGAGGAAAGAAAGATGAGAGGGCAAGTATGCAGCTCTACCAGCCTCAAAGGAGCATCCTGGCAGGTTGCAGGACTGTGGAATTCTCCCAGTCCTGTCGGACCTGCGGAGCAACATGCCCGGACAAGAAAAGGACCTAAAAACgttcacataaacacagaggAATCCAGCTTGTCGCACAGATCGCATTTAAGAACACCCATTCTCGAGTATTTATGGCTTCCACACATACAAAACACAGCGATATGATAAAACACGTACGTTTCGTCTCAGATACAAATCACTTTTACAAGTCTCCCTCTGCTGTCTGGTCCAGGTTTGCAGGAGGAAATGATATCAGGGAGGGACGCGCAGAGACACGTGCTTCCCGGCTCACGTGGTGCCGGCCGTATGAAAGGTTAAATAAACACTACACGGTTTGTTGAAATGTCGCATTTATATGATGCTTTGTTTCTgctgcacacacatacaaaaacagTCCGAgtgcctctctttctctgtgtggtTGGTCGTTCAACCtgtgtatataattgtatttaattcagAAACGCAAGGTTTGGAAATGAATGTAATGTTCTCCCATGAAAATCCGTCAAAACGAGCCTCCCGCTGTAAACGTAAACGCTGTGACGTTCTCCAAAGGAAGCGGCGCTGTGAATCTCAATATAAgcctgtatttttattttctgagggAAAACTTTTTGAAGGAGGAGAGGGTGGGGGTGATTACTTTCCACTGTAAATGATTGAGTGCTGTCACAATGGTGTTTCTGAGAGCGAGCACAATCACTCGCTTGGGTTTCTTTGTAAACCATGAGCATGTTTTCTTCTTTGGACTCTGCCCCGGTTTTTACTGATAAAGTCAGGGAGCTAAAGGGTTCCCTGCCAAGACAGTGCCTTAAATCACATTATACAGAAAGAACCAACACTCTTTGTGGCATTTAGCTATGGACATAATCTTAGTTATGCCACATATTACAAAACTTCATAACATCTGACTCTTATCTGCAATTTGTATGGATTAAGAAACTTGGATGCTGATTTAATCCAGAAGGGGAGAACAAGTTATTCCTCAGCAGGTTAATGCATTTGGGGCAAACTCATTTCTCTTGACTGGTATATGTGCCGCAATGCCAAAATTTCCTCACAAAGGGTACTCTTTTATGTATAAGGAAATGTGACGTTAGATACCACtaagtttttttgtatgtaaaagTGCCTTTGGGTTGTCGCTATGCACTGATCGCAGACCGGCACCAATCTTTTACCATGTTAAGGGAGGTTCAAAGTATGTTTTAGATCAGTGTTGAAGTCATACATGACCTCATCAATTACACATCATTAACCGCATCATTTTGCAGCCCAGTGAGAACTCGTACATCATCCGCttagcaaaaacattttgtcattttctcaccctaatgtcgctccaaacctgtatggcttttGTGGAACACGAAAgaacttttttgaaaaatgcttcagtgttttttttttttttgttcatacagtgaaagtcagtggggtccacCAGACTCTGGAAAGTCTCATTCTGCGAAAGATACTAGGTCATACAGGTTTATACTGAAacgagggtgagcaaatgacagaatttttattttgggttaaCTTTTCCCCCAAAGGAGTCTGGATAATCCCACCAATTGGCACTGACCGAGCTCATTATCCCCGTCAATCTGCTCCGGCCCGCCCAGGGTCTTGTGTGAGTGTGCACATGTGTATACAAGTTGAAATATGTACCTATCTGTAAAACGTGGGGGTCATAGTGGGGTGAGGGGTGGCCTGGAAAGAGAAATATGGCTGAATTCCAGCAGATCTAGACAGATTACAGCAGGACTTGCCCTCTGAACCACAAAGAACCACAATGTGAACACAGAAGACAAATGTATGTTAGGTGCGTATttacgtgagtgtgtgtgttttttaattaaaaggctTGACTGGTTTCTGTGGATGTGATGGTTTGCATACTTTAAATCTCACAGAGCTTTGTAGAGATTTTACGGGACTGCTGTGAAAAAATAGAGCGGGGCCGAACAGTGAAATCCAGTGAGCAACATGAACTGTCAGTTGAAACAAAAAGACTATTGTGTTTCCTTTTCCAGTgagagtgtttttctttttttctttgggaTTGTTAAATTCTCTGACCACCAATCCGTGGGActgtttctcattttaaaaaaagatgttatgCACTGTTTACCAATGTTGCGTCTTCATCTTGGTAAGAATGTACTGATATCTCTCAGACTCTCTCCTTCTTTATTGTATCATTTTACAATGTCTGACCTGTGTCCTTAAAGCATAAGTTCGAGGTGTCATTTTCAACAATTAAAGTGCCTTTTTATGAA

Function

GO:

id name namespace
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway biological_process
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72309 lncRNA downstream 3240 309044 ~ 336585 (-) True G48825
TU72292 lncRNA downstream 31500 287255 ~ 308325 (-) False G48817
TU72294 lncRNA downstream 31500 306421 ~ 308325 (-) True G48817
TU72293 lncRNA downstream 33460 300245 ~ 306365 (-) False G48817
TU72290 lncRNA downstream 45356 291855 ~ 294469 (-) True G48816
TU72411 lncRNA upstream 177770 536102 ~ 579489 (-) True G48895
XR_006251322.1 lncRNA upstream 272454 630786 ~ 634062 (-) True LOC122348399
TU72447 lncRNA upstream 453664 811996 ~ 812549 (-) True G48926
TU72435 lncRNA upstream 461305 819637 ~ 822438 (-) False LOC122348397
TU72458 lncRNA upstream 540811 899143 ~ 903900 (-) True G48936
XM_043245958.1 mRNA downstream 54825 283333 ~ 285000 (-) True tifa
XM_043244840.1 mRNA downstream 126140 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 126142 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 324751 8263 ~ 15074 (-) True LOC122348751
XM_043245930.1 mRNA upstream 3691 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 3691 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 3691 362023 ~ 367372 (-) False si:dkey-171c9.3
XM_043243146.1 mRNA upstream 187771 546103 ~ 553394 (-) True gpr185b
XM_043243798.1 mRNA upstream 305343 663675 ~ 716212 (-) True si:dkey-172j4.3
unassigned_transcript_1267 other downstream 58970 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 65327 270369 ~ 274498 (-) True G48823
TU72258 other downstream 126167 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 126167 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 316122 23604 ~ 23703 (-) True LOC122349836
TU72452 other upstream 522270 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 683676 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 811649 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 811649 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 1539751 1898083 ~ 1898826 (-) True G49309

Expression Profile