RNA id: XM_043244591.1


Basic Information

Item Value
RNA id XM_043244591.1
length 1989
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC122348751
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 8263 ~ 15074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGATATGTTCTTTTCCTTTGCGTTTTAGGACAACAAAACGCCAAAGCTCACCGTACCCTGTTCGGACATCCAAGAGATTCGACGCTGTAATCGCCTAGAGATGCCAGACAACATGAACACATTTGTCTTAAAGgttACTGGTCATTCGGGTAGTTTTATATTTGAGGCTGATAATGAGCAGCAGGTGAGCTCTTGGACCACCGAGCTCAGAGAATGCATCACAAGCAGGTCAGATAGTGTGGATGGAGAAGCGTTTCCTGTTAGTGACTCGCTCAACGCAGCTCGCAGAGGGAGCACGGAGCCCAGCAGCCAGGgCTCTCTAGGTTTTGGACTAACAGAGCATGCCTACAATAAAACGGATCACTTCCTGTCCTCTTACCCATGGTTCCATGGGCCCATATCACGTGTGCGGGCTGCCTACCTTGTACAGCATGCTGGGCTCAGCGGCCATGGGAACTTCCTCGTGAGACAGAGCGAGACGCGGAGGGGAGACTACGTCCTCACGTTTAACTACCAGGGCAGAGCAAAGCATTTGCGTCTATCTTTAACTGAATGGGGTCAGTGTCGTGTGCAGCACCTGCGTTTCCCATCAGTCATGGACATGCTGAGTCACTTCCGCAACTGTCCGATCCCGCTGGAGTGCGGCGCCGCATGCGAAGTTATGCTGGCCAATTACGTGCGGGTAAACCCCACTCACACAGGTCAGAGTTCGGCCGTCGGCTCTCCGGTATTGGTGCCCTTCTCTCGCTGGAGCTCAGAGCCGAGTCTGGCTCACTGCAGTCCGGATTCGTGTCCTCACTCCAGCCCCTTCACGGCCCAGTCGTCCGGATTATCCGTGCTCCCGCATCGCACGGGCGCTTCGTTTCCAGACCGCCCCGTTCCCGTCCCCCTGCGCCGGAGCGAGTCGGTGGGCCGCAGAAACCTGCTCCGCCACCCCAACCCGCTGCCGCCCCTACTGGCCAACCGGGACTCTGACTACGAACTGGAGCCGCCCGACAGGGGGCGCAAGAGAGCCATCGACAACCAGTACATGTTCTTCTGACAGAGACAGAGGAGGAAAAAGAAGAGAACAAGCCGCGGATGAAAAGTGCTCCGGAATTCCCGGTCGGATGGAGAGCGTCTGGCAACCAAACGGAAGAAAGGAGTTGGAGTCGTGCAAGATTGCGCACGAGACTCGGGGCAGAGGCACCTGTGCGCTAACAATACCGCCGTACACCGGACACCCAGCCCTGGCAGCTGTCTACCTTGTGAATGTATTATACGGATGTTTCGCTATCAAATCAGTGTGTATCGTAAAATAGCTCGGAGGAGTTGTTGGATGGGAACGTTGCGAGACGGCTGGTCAGCAAGCCGAACACAAACCAAGGGTCCATTCACATTCAAACACTTTCGTGTCTACACTGGAAGCGGACATCGCAACAGCTCGAGGCCGTCTACACTGGATACATTCATTCAGCTGTATGCTAGAGGCTAGACTGTAGTAATCGACGATTACTAAAACGACGATAACATTTGTTTGTcgatcagacaaaaaaaatcgtTATATTCGacagaaatgcattacaaaatagATTTTGCATGCGATTTAGTTTGATCTACAACTACAACTGCATATGCTTATAgtagaaatgacaaaatgattCAAGTTAGCTCATCAGACCAGGAGGCTAGAATTTAGCGATTATTAAAATCGTGTCAAAATCATTCGAAGTAATCTTTATTTTCCACAGCAATcctttataaaattaatttagcatgCGATTAACTTTAGCATTAATTTTGCATATGTTCATATCCCTACAACTGCATATGCGTATTGTTAAGggaaaaaataagacaaattaGTTCGCCAGACCAGGAGGCGAAAGCGTGATAGATTGGAAAAATCATCAGaatttacaattacaaaattgATTTTGCATGtgatcattttataattatgttttattattagtactCCTACGACTGCATACGCATATGGTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251465.1 lncRNA downstream 4196 1991 ~ 4067 (-) True LOC122349555
XR_006251485.1 lncRNA downstream 6399 1457 ~ 1864 (-) True LOC122349723
TU72136 lncRNA upstream 41331 56405 ~ 64136 (-) True G48720
TU72155 lncRNA upstream 72476 87550 ~ 89420 (-) True G48733
TU72154 lncRNA upstream 72577 87651 ~ 89420 (-) False G48733
TU72159 lncRNA upstream 105945 121019 ~ 121395 (-) True G48736
TU72164 lncRNA upstream 154925 169999 ~ 170927 (-) True G48741
XM_043244840.1 mRNA upstream 196267 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA upstream 196267 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043245958.1 mRNA upstream 268259 283333 ~ 285000 (-) True tifa
XM_043244534.1 mRNA upstream 324751 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 346949 362023 ~ 367395 (-) False si:dkey-171c9.3
XR_006251529.1 other upstream 8530 23604 ~ 23703 (-) True LOC122349836
TU72258 other upstream 196267 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other upstream 196267 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72302 other upstream 255295 270369 ~ 274498 (-) True G48823
unassigned_transcript_1267 other upstream 265708 280782 ~ 280855 (-) True trnan-guu_33

Expression Profile