RNA id: XM_043245375.1


Basic Information

Item Value
RNA id XM_043245375.1
length 3342
RNA type mRNA
GC content 0.44
exon number 11
gene id mmp14a
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1014919 ~ 1025201 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAGCACAGGGAACGTGAAACAACCACGTCTCCAATCTGACACCGAAGTCGCCTGTGGAGAGGGAAAGATCAGCGGACAAAAGAAAACGCAAGATAAGAGCATAGAGCGAAACCAAGACAAGTACATTTAACCTTTGAAgatagttttctattttttgggGTCCAGTTTTACTTTTGAAAAGCTTTTCATTAATAATGATTATGCACACTTTATAAATTAGGCAAGTTAGgttttcgttcttttttttttgtgcgctTTTTGAGTTTTAAGGAAACGTTCTCACTGTTGGAATGGTCTGATTCAGGAGAATCTGCTGCGGAAACCTAGACAAGAAAACTAAGAACGGAGCCTAGAGCGTTTTTGTGTCTCGAGTTCAGTAGTCTCGCGCATTGAGGAATGTTACTGAAGCTTCAGTCGTTACTCGCCCTCGCCAGCGTATTTCTGGTGCAAAGCGGGACCAGTGACAAAGAAGTCAGACCAGAGGCATGGCTTCAGCAGTATGGGTATCTTCCTCCTGGCGATGTTCGGGCTCAGGCAATTCGCTCTCCTAAATCCATCATCACTGCTATATCCGCTATGCAGAAGTTCTATGGCCTCACTGTCACCGGCACTATGGATCCAGCCACTCTCTCGGCCATGCAGCGGCCAAGGTGTGGAGTTCCAGATAAATTTGGCTCTGAACTGAAGAGCAACCTACGAAAGAAACGCTATGTCATCCAGGGCctgaaatgggaaaaaaaagaagtcactTTCAGTATCCAGAACTACACTCCTAAAGTGGGCGAACAAGCCACACACGAGGCCATCAGGAAGGCCTTCAAGGTTTGGGAAGCTGTGATCCCACTCAAGTTCCGTGAAATCCCATACAGTCAAATCAATGGCAAAGTGGACAAGTTTGCAGATATCATGCTTTACTTTGCGGAAGGCTTTCACGGAGACAGCACCCCATTTGATGGCGAGGGAGGTTTCTTGGCCCATGCATACTTCCCTGGTCAAGGTATCGGAGGTGATACCCATTTCGATGCAGCAGAGCCTTGGACAACAGGCAATGTTGACCAGGGAGGTAATGATGTGTTCCTGGTGGCAGTGCATGAATTGGGTCATGCTCTGGGTTTGGAACACTCAGGCGATCCCTCTGCCATCATGGCTCCCTTTTACCAGTGGATGGACACAGAGAACTTTGTGCTTCCTGATGATGACAGACGGGGGATCCAGCAAATATATGGTGCTGGCTCTGGTGAGGTGCCCCAGCCTCCGGCCCCGGCCCCCACCCGCAGGCCAGACCGACCTTCCTTTGGCCCTGATATATGTGAGGGACACTTCGACACCATTGCTTTTCTCGGGGAGATGTTCGTCTTCAAGGAAAAGTGGTTCTGGAGAATGCGTGATGGTAAACCTCAGCAGGGCTATCCCATGCCCATTGGACACTTCTGGAAGGGACTGCCACCCTCAATCAATGCGGCCTACGAACGCTCTGATGGAaagtttgttttcttcaaaGGTGACAAGTACTGGGTTTTCAATGAGGCAAAAATGGAGGAAGGTTATCCAAAAACTTTCAAGGAGCTAGGCACAGGCCTACCAAGAGACAAGCTGGACGCCGCTGTTTTCTACACACCCACTGGCAACACCTACTTCTTTAGAGGAACCAAATATTACCGTTTCAATGAGAAAAGCAGATCTGTAGATCCAGATTACCCCAAACCTATCAGTGTATGGCAAGGAGTACCGGATAACATCAAAGGAGCCTTCATGAGCGAAGATGGAGCCCACACTTACTTCTACAAAGCCAATAAGTACTGGAAGTTCAACAACCAGCATCTGAAGGTGGAGCCAGGCTACCCCAAATCAGTACTGACTGACTGGATGGGCTGTGAAGGAGAGGAGCCCAAGAAGAGGACTGGCACAGATGAGGAAGTGCTCATCATTGAGGTGGACGAGTCAGAAGGCGGGGCCATGGGAGGAGCCGCAACCATCGTCATCCCTCTCTTTCTGTTGGCCTGTGTGCTTGTCACTTTGGGGGCTCTGCTATTCTTCCGCCGCTACGGCACCCCTCGCGCGCTCCTCTACTGTCACCGCTCTCTGCTCGACAAGGTTTAGAGATGAACACGAAAGGCACGGGAAGAGACGAGAAAGAGGGATACAAGTAGATGGCATTTGGAAGGATGTTGAATTGGAAAATTTTTATTAGGATGGAGTGAAAATGAATGTCAGACTGTAAAGGTCTGCAAGCAGGGCGCGATGAAAAAGTGAAGGATGCGTATCGTATGTTTTTCTATTTACATGTACTTCTCtgccattaataaaaaaaattccaaaatgaAGTGGGAGATAAGAGAGACAGACAAGAGCCCACCTCCATCTCTTACTTGGTTACGGTTTATCAGtgaaatgcacttttgctcaTTCAGTCTTCTTTTCAGTATATAATCCCTCCTTTATCCTCTCTGAAAATCTCCTTCCCCAGAACCGAACTTGACTCCAGCCGGGGCGGCTGTTTGATTGACATGTTCTATATTCGAAATGATCTCACTTTGACATATTTCATTAACTCAGattttgcttttttacattGCTGATCCAGTGAAAAGATCCTGCACCCTATTATGTGCCTTTGCCAATGAATTAATAGTATGGAAGGACTATTGTATTTGACCTTCCTTGCACCTTTTATTCACCAAAGATATTTGCACAAAGTACGGCTCGACTATAGAGACCTGCTGTACGTGAAAGGTCAAAGGTTACAGGTCAAAGTTCAGGGAGAGAGAAGCCGAGCAGCTTCTGGAATAGGCCAGTTTAAATACACCTATAGAGCAGAGCTGTTCATCTGTTTCAACTCAAAATAACTATTGTTATTGTAATGTGTTTGGTACattttactatgattaattatgtcattaatgATTGGCATTGTTATTATAACTatggttattgttattattgttctCCATGTGTAGTCTTGcctattttaaattgtcatttcaAGTCCTGCTGGACACAGGCAGAATGTGACTTATTTCAAATTAGCTTCTGATCTTTTAATGTCAGGTTTAAGGTCAGAAAAATCAGGTTTCTATAATAAGGCTGGAGGTGAGATTTTCTTGCTCTCCACTTTGcagaaacaaataattatttatgaacaGTAATGGTGCTATGGGTTTCTCACTGCATACATCATCAGTATTAGACATTTCTGAAGTGGTTTTTAACAATGATAATGGTAAtgatatttataatgataatgatgtagtgtaaatgtaAAGGAATGACATTTTTTGCCTGTTTCATACTTTTTGTACttggaaatgaaaatgaaataaagttccttttttaattctc

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051216 cartilage development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0006508 proteolysis biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001666 response to hypoxia biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72568 lncRNA downstream 18420 996084 ~ 996499 (-) True G49011
TU72560 lncRNA downstream 32157 982339 ~ 982762 (-) True G49004
TU72533 lncRNA downstream 67757 946464 ~ 947162 (-) True G48985
TU72458 lncRNA downstream 111019 899143 ~ 903900 (-) True G48936
TU72435 lncRNA downstream 192481 819637 ~ 822438 (-) False LOC122348397
TU72588 lncRNA upstream 53762 1078963 ~ 1079192 (-) True G49023
TU72772 lncRNA upstream 144780 1169981 ~ 1220893 (-) True G49133
TU72875 lncRNA upstream 439988 1465189 ~ 1468013 (-) True G49186
TU72908 lncRNA upstream 472122 1497323 ~ 1517408 (-) True G49210
TU72935 lncRNA upstream 581670 1606871 ~ 1607083 (-) True G49231
XM_043244539.1 mRNA downstream 7372 999877 ~ 1007547 (-) True ajuba
XM_043245510.1 mRNA downstream 44172 968121 ~ 970747 (-) True dhrs4
XM_043245593.1 mRNA downstream 53537 958470 ~ 961382 (-) True cideb
XM_043243109.1 mRNA downstream 71794 927412 ~ 943125 (-) True si:dkey-183c6.8
XM_043244976.1 mRNA downstream 117240 895085 ~ 897679 (-) True vbp1
XM_043244833.1 mRNA upstream 15721 1040922 ~ 1046317 (-) False zgc:153151
XM_043244832.1 mRNA upstream 15721 1040922 ~ 1046317 (-) False zgc:153151
XM_043244831.1 mRNA upstream 15721 1040922 ~ 1046317 (-) False zgc:153151
XM_043244829.1 mRNA upstream 15721 1040922 ~ 1046317 (-) True zgc:153151
XM_043244830.1 mRNA upstream 15721 1040922 ~ 1046300 (-) False zgc:153151
TU72452 other downstream 131108 880602 ~ 883811 (-) False zgc:162171
unassigned_transcript_1267 other downstream 734064 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 740421 270369 ~ 274498 (-) True G48823
TU72258 other downstream 801261 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251388.1 other upstream 16807 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 144780 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 144780 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 872882 1898083 ~ 1898826 (-) True G49309
TU73048 other upstream 876861 1902062 ~ 1904331 (-) False LOC122348471

Expression Profile