RNA id: XM_043245958.1


Basic Information

Item Value
RNA id XM_043245958.1
length 1496
RNA type mRNA
GC content 0.43
exon number 2
gene id tifa
representative True

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 283333 ~ 285000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTCATGTTTATATCTGGTCATTGAAGAGAGGTAACATCACAAGACGACCTGGCGAGTGCTTTACGTTTTCAGCTAACGTTCAACCGCTCAACAAAGGGCATTTCTTTTTCGTCAAAACGAGAATAAAGCGCGCCCGTCGTCTCCGGGTCAAATATAGAacgaattacatttttgaaataagaCTATAATACGAAACAAATAGCGAAAGTGTGGAAGTCGGTTGCGCAACTCTGGAGTTTTTGAGAGTCACATGTTCCCAGCTGGAGGGGGATTTCGGTGCTTCTGATGCAATTCCCTTTGTTGAGCTCATAGTATAGCGATCCCGGCTTCAGGACAGCAGTCCGTTAGTTCATGATCGTTGCAAACAACTTTTGAAGGTTTAACTGTAAACAAGTTGATTCAGCACCACGGAAGTTGCGTTATATTTCGCAGAATGAACGACAATAGCAAACTCGAGACCGAAGAACTGCTTACTTGCCTTCATGTCCATCTCTTCCACCCTAACCAAGCCAGCCGTCCACTCTTCCACAACCTGCCCCTAAATCAGCCGTACAAAATGGAGGCTGAAGACCCACTAAGGCTCGGCCGCGACGGACAGACCTGCATCTTCGCCCTGAACGACACCTCTGTTTCCAGAAAACAGCTCTCCGTACAGGCTCATAAGAAAGCTGGCAGCCCGTGCTTGAGCTTCACGATCCAGAACATGAGCCAGAAGGTCAAGCTAATGGTTGGCGGGTCCGAACTGAGGTACCTCGAAAAGGCTGAGCTTGACGATAAGGTGCTCTGCCGCTTTGGAAGATACGAGCTGCTGATTTGGCAGGAACCAGGAGATTGCGAGAATAAGTTTGAGGTCCTGTTTGAAACATGCAATGCACCTCCTTCGCAGGAATCGGGCACAGATGTGCCATGCAAACCTCCTGTTATGGATACCAACATGCCGTGGAGAAACTTTGAGAATGGAGCGCCAGTAAGCCAAGAGCCGCTGGAGTCAGATGAGACAGTTGTTTTAGTGTAGATATTTTTTTGGACATTGCTCTGCGAGGAATCAGACTGATCAGAATCTGTGTTTAATTACTGTTGTTGTCGATACTGTGTGTTATGAAAGCACTCAGCATGTCTTTAACGTTTAAACCTCAGAAGTGACCCTACTAAGTGACCTACTAACATTTCTTCTGGAATGTCACTGAACCAGTTTTGTTGCCTATACCGTGTCTTTGTGTTCCTTCTTTTGTAcagatattttattacatattttactgGGATTATCGTCACACACGTGCTTTCTCTTAATCATTGTGTGTGTTCCTTGCATAAGTGCCTTTGGccgttgtttttataaataatatttttattgcattgtattattttatatcgaCTGTTACTTGACAGAACACGAATCATaagcttttgaaaaatgtgaaatgactGTGATTGAAGGGTTATTCGTTCTACTGTCATGTTAtctcatataataaaataaaatgttcatattta

Function

GO: NA

KEGG:

id description
K23826 TIFA; TRAF-interacting protein with FHA domain-containing protein A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72304 lncRNA downstream 2984 279484 ~ 280349 (-) True G48824
TU72281 lncRNA downstream 26548 256547 ~ 256785 (-) True G48808
TU72275 lncRNA downstream 41786 239294 ~ 241547 (-) True G48802
TU72244 lncRNA downstream 45156 194136 ~ 238177 (-) False G48781
TU72238 lncRNA downstream 45156 236640 ~ 238177 (-) False G48781
TU72292 lncRNA upstream 2255 287255 ~ 308325 (-) False G48817
TU72290 lncRNA upstream 6855 291855 ~ 294469 (-) True G48816
TU72293 lncRNA upstream 15245 300245 ~ 306365 (-) False G48817
TU72294 lncRNA upstream 21421 306421 ~ 308325 (-) True G48817
TU72309 lncRNA upstream 24044 309044 ~ 336585 (-) True G48825
XM_043244840.1 mRNA downstream 69648 211341 ~ 213685 (-) False si:dkey-112a7.4
XM_043244838.1 mRNA downstream 69650 211341 ~ 213683 (-) True si:dkey-112a7.4
XM_043244591.1 mRNA downstream 268259 8263 ~ 15074 (-) True LOC122348751
XM_043244534.1 mRNA upstream 54825 339825 ~ 358332 (-) True tnfsf10l
XM_043245930.1 mRNA upstream 77023 362023 ~ 367395 (-) False si:dkey-171c9.3
XM_043245927.1 mRNA upstream 77023 362023 ~ 367395 (-) True si:dkey-171c9.3
XM_043245928.1 mRNA upstream 77023 362023 ~ 367372 (-) False si:dkey-171c9.3
XM_043243146.1 mRNA upstream 261103 546103 ~ 553394 (-) True gpr185b
unassigned_transcript_1267 other downstream 2478 280782 ~ 280855 (-) True trnan-guu_33
TU72302 other downstream 8835 270369 ~ 274498 (-) True G48823
TU72258 other downstream 69675 211341 ~ 213658 (-) False si:dkey-112a7.4
TU72259 other downstream 69675 211341 ~ 213658 (-) False si:dkey-112a7.4
XR_006251529.1 other downstream 259630 23604 ~ 23703 (-) True LOC122349836
TU72452 other upstream 595602 880602 ~ 883811 (-) False zgc:162171
XR_006251388.1 other upstream 757008 1042008 ~ 1046317 (-) False zgc:153151
TU72774 other upstream 884981 1169981 ~ 1220893 (-) False G49133
TU72777 other upstream 884981 1169981 ~ 1220893 (-) False G49133
TU73047 other upstream 1613083 1898083 ~ 1898826 (-) True G49309

Expression Profile