RNA id: TU88551


Basic Information

Item Value
RNA id TU88551
length 2337
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G59877
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1162420 ~ 1164776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgagtaagaaTGTGTGAGCATCTGTGAGTGTGAGTGCAGGGTGTGTGTGCTCTCATGTATGAGTATGTGAGTGTGCATGTGCAAATATATGTGTAATACtttagtgagtgtgtgagagtgaatatgtgtatgtgtgagtgtgtatttgtgagtgtgagcgtgtgtaaGCATGTGTGAgtatgtttgtgagtgtgtgtgtgtgtgtgtgatctacaGATCTACTCTGATCTAGTGGATACTGATGATGTTCACACAGATCTACTCTAAGCTGTGATCCTGAGAAGCGACAGTCTCACACCAGACACACACTCCCAGGAACTCTTCACACACAGCTTTAATCTTCTTTAGACGCACCGTCAGTCAATAGATTTTGTTCAGTatgatttttaaagaagtctcttctgttcattaagcctgcatttattttaataattgttttttttttcagaatgatctgaagaatagaaatagaaaaacagaaagatcagcatttatctgaagtAAAAAGTCTTGTAACATTATACACTATataaatcaatacttttatttagcaaggatgctcTAAATGGATCAGAAGTGATCAAATAAAAGTAGTTATGATGTTAAAAGATGTAGTTTAgagaaatgctgttcttctgaactttctattaatcaaagaaaccTGAATAAACTCTACTagatcagtatattattctgatttctgaggatcacgtgacgctgaagaccggagaaatgatgctgaaaatcacaaataaactacactttaacacacattcacacagaacacTATTTTTGCTGTGCTTTCAATCTGAGCAGGCTtggagagcagaagagacttctttaaaaaaaaaacataaaaaaatcatactgcTCATAAACGTTTGAGTGTCAGTGTACTTCACGTCCTCTGATGAAGGAGCTGCTGGATCAGGAGATCTGGTGAGCGTCTGTCGCTCctcaggagtgtgtgtgaggctcaGTACCTGTGTCTACCTGTCCTGTCTGGGACACTGAAAGATAAAGGTctgcagaaagagagaaacgcACAGAGCTGGAGACAGTCAGGAGAGAGAGTGAAGAAAGACAGTTACAGCAGCTCAAGATCAACACACTTCACCCAGAACCAGCTCAGAAGATGAACTCCTCGGGGTCTGGAGCTCTCACGCAGTCATCAGACTCTTCttcatgacaaaaaaagatcatgttccttgaagatattttgacaattttgtactatatcaaaacttcatctctgattagtaatattcatcGATGAGAGTTTCATCTGAACAACTTGATGATATTTcttccctcagattccagatattttctaatagttgtatctcagagaGATATGGTCCGATCATaaaccagacatcagtggagAGAGTATCTGATGAGAGGTTTAGCTccagggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttatcttgGAGTATGAGGTGAAAAATGACGGGTGTTTACTCTAACGCAATTcaacattgttttgtttattcagaatcagaataaacatcagaataaacgtagaattattataaaataatcgTTAGTGCTGATGCAGAAATTAACGTGGCCTTTGGACGGACCGGTCTGGGTTTAAAAGACacttaatattcatattatttatgatCAAATTAGCAGACGAGAACAAAACTAGAAATAAGTTGAATAATGACTCTATAATGCATGAACTGATTCTCTTAGTGTTTCTGTCTTGCTTTAAAAGacacattcacaaataaaatgattcaagatcttgaaaataaagtcacattttgtgagtttttgcttaaaaaaagctaaattatctGCCAATGAAGCCTTTGGACTGAGACGACTCTGAGCCCAGAAGCAGATGTTTTTTCTCGTTTTAAGCAAACACTAACAACATCTTTCTTGTCCATCAAACGCATCTCGATTCAAGAACTAAACAAGACTAGTCTAGAGCTGAACTGGTTTTGATCTGGTTCTCGTGTCTACGGCTGAAGGTGTGGTTTTGTGAAGCTGCTCGTCTCAGATCTGTGTGTTGGGATGGAAACGGAGCCTGCTTCAGACGCTCACGACGTTCCCGGCAGAAGCGAGGAGCCCCACACCGATCTGATCTtcagagcagcagcagcaggcgCTCAGAACCGCACGGCATTCTGGGACATGCTCATGCAGCGGGCGGAGCGGCTCTCACCTCAGACTTCTCCATCTTGCCCTGTGCCTCCACCTGCGTGATGATCTCGCTCATGTTGGTCTCCAGCACCATGCCGCCCATCACCATCTCCGCTAGGATGTTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88549 lncRNA upstream 1260 1156922 ~ 1161160 (+) True G59876
TU88548 lncRNA upstream 1491 1159946 ~ 1160929 (+) False G59876
TU88509 lncRNA upstream 139506 1021192 ~ 1022914 (+) True G59845
TU88461 lncRNA upstream 185714 973486 ~ 976706 (+) True G59814
TU88472 lncRNA upstream 202249 958679 ~ 960171 (+) True G59824
TU88575 lncRNA downstream 46039 1210815 ~ 1213009 (+) False pggt1b
TU88590 lncRNA downstream 103408 1268184 ~ 1268392 (+) True G59898
TU88591 lncRNA downstream 103662 1268438 ~ 1268674 (+) True G59899
TU88634 lncRNA downstream 227367 1392143 ~ 1393428 (+) True G59914
TU88600 lncRNA downstream 231271 1396047 ~ 1489391 (+) False G59903
XM_043246766.1 mRNA upstream 32918 1069841 ~ 1129502 (+) True sema6a
XM_043247205.1 mRNA upstream 145855 1005559 ~ 1016565 (+) True hsd17b4
XM_043248001.1 mRNA upstream 239212 918543 ~ 923208 (+) True LOC122351116
XM_043247893.1 mRNA upstream 285473 856045 ~ 876947 (+) False LOC122351049
XM_043247892.1 mRNA upstream 291419 853071 ~ 871001 (+) False LOC122351049
XM_043247377.1 mRNA downstream 5873 1170649 ~ 1178671 (+) False cdo1
XM_043247376.1 mRNA downstream 5874 1170650 ~ 1178671 (+) True cdo1
XM_043247331.1 mRNA downstream 20993 1185769 ~ 1187485 (+) True tmed7
XM_043247265.1 mRNA downstream 23572 1188348 ~ 1199937 (+) True LOC122350615
XM_043246262.1 mRNA downstream 39465 1204241 ~ 1209643 (+) True LOC122350068
XR_006251599.1 other upstream 310416 842077 ~ 852004 (+) True znf608
TU88420 other upstream 357581 803653 ~ 804839 (+) True G59807
TU88285 other upstream 622354 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 750684 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 850104 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 866102 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 869116 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 872976 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile