RNA id: TU88634


Basic Information

Item Value
RNA id TU88634
length 1025
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G59914
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1392143 ~ 1393428 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTGGCTGTAGCTTTGTGTGACGGTCCTGCAGTCTGCATGGCATTACTGTACACTAAACAGCATcaacacattcacacagcagTTAACTAcagtaaaaccataaaaaaacattattacttgaagttaaaaaaaaaagcattaacctaaatgaaaaaaaaaaaaaaatcagctagttgccaaagcaacttttctatttattttgtaaaatattagattgttttacaaaatatttgttttacaaaaatagtataaaatattgtgaaatatttttacaatttaaagtaactgcttgtattttaaaatgtcatttattgatgcaatgcaatgatttattttgctcGAGAAATATTTCCGATTAttataaaagctgaaaatagtTCATATTTTCGTGGATAAACTATCATGCAAAATATGGGGTTATTACAgctaaatacaaacaaaaaatgaatcatttcattCATCAAGAATgttaaggatgcattaaaaagtcATCAGTGTTACGAAGGatttctatatatttctatattcagttcttctgaacttttttattcatctaatgtatcacagtttatacaaaaataactgttttcaacactgatgatactcagaaatgtttctcgagcagtaaatcagtatattattatgatttctgaaggatcgcgtgacGCTGAAGACCAGAGGAATGAGGctgaaaattcataaaaataaatagcatctcaacataaatataaatatagctattttgaattgtaataatatttctctatttttaccgtaaagacttctttcaaaaacatttacaaactgaATTAACatatagacatattttaaataatgacaataataatagcaaaaaagTACTGAAACACACAACATAATAACAACAGTGTTcgtattaaagttaaaaattcacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacatatacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88591 lncRNA upstream 123469 1268438 ~ 1268674 (+) True G59899
TU88590 lncRNA upstream 123751 1268184 ~ 1268392 (+) True G59898
TU88575 lncRNA upstream 179134 1210815 ~ 1213009 (+) False pggt1b
TU88551 lncRNA upstream 227367 1162420 ~ 1164776 (+) True G59877
TU88549 lncRNA upstream 230983 1156922 ~ 1161160 (+) True G59876
TU88600 lncRNA downstream 2619 1396047 ~ 1489391 (+) False G59903
TU88602 lncRNA downstream 6280 1399708 ~ 1491642 (+) False G59903
TU88594 lncRNA downstream 8331 1401759 ~ 1493171 (+) False G59902
TU88596 lncRNA downstream 9296 1402724 ~ 1493171 (+) False G59902
TU88599 lncRNA downstream 9296 1402724 ~ 1494731 (+) True G59902
XM_043247075.1 mRNA upstream 125909 1253631 ~ 1266234 (+) False spats2
XM_043246611.1 mRNA downstream 62803 1456231 ~ 1481554 (+) True LOC122350265
XM_043247914.1 mRNA downstream 165692 1559120 ~ 1560367 (+) True LOC122351062
XM_043247341.1 mRNA downstream 255050 1648478 ~ 1649618 (+) True LOC122350660
XM_043246172.1 mRNA downstream 409267 1802695 ~ 1807402 (+) True serpind1
XM_043247948.1 mRNA downstream 429208 1822636 ~ 1827411 (+) True snap29
XR_006251599.1 other upstream 540139 842077 ~ 852004 (+) True znf608
TU88420 other upstream 587304 803653 ~ 804839 (+) True G59807
TU88285 other upstream 852077 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 522032 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 621452 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 637450 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 640464 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 644324 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile