RNA id: XM_043247734.1



Basic Information


Item Value
RNA id XM_043247734.1
length 484
RNA type mRNA
GC content 0.44
exon number 3
gene id ccl27a
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 565886 ~ 570973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCGCACGTCTTTAAGACGGCTCTTCTGCGTTCATTCACAAGCTCTCCAGCCATGAAGCTCAGAACTACATCTGTCCTGCCGCTCGCCTTCGTCGTCgtcaccatcatcatcctcaccaGCACCGAAGTGGATGGCATTCCCAGCTGTTGTGTGAGACTTTCAAAGAACATCCCTCGGAGCAAGCTGCGTTTGGTCACCAAGCACGAGATGCAGCTCAAGTCTGGAGTGTGTGACATCGACGCAGCGATATTGCACGTCGGAAAGCAGAGGATCTGTGTTCATCCTAAAGTCTTAAAACTTTTGAAGAGACTCAAGAAGCAACGCAAAGCCAAACGGATTCAAGCTAagattaaataaacatcatcatcTGGTTTATGAGGCACTCGCTGGattgcatgttttaatatttttttactataaactGTATATAATCTCTGAATACTCTGCTCTTTCATGCaataaaatgcctttttttaaaatgaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88300 lncRNA downstream 16704 514767 ~ 551882 (-) True G59739
TU88322 lncRNA downstream 20675 545919 ~ 547911 (-) True G59750
TU88237 lncRNA downstream 331929 236074 ~ 236657 (-) True G59688
TU88239 lncRNA downstream 331929 236074 ~ 236657 (-) False G59688
TU88197 lncRNA downstream 484733 83574 ~ 83853 (-) True G59654
TU88788 lncRNA upstream 44314 615281 ~ 617472 (-) True G60016
TU88829 lncRNA upstream 89468 660435 ~ 661098 (-) True G60036
TU88765 lncRNA upstream 152223 723190 ~ 725000 (-) True G60003
TU88767 lncRNA upstream 154297 725264 ~ 727029 (-) False LOC122349987
TU88853 lncRNA upstream 161873 732840 ~ 734242 (-) False csgalnact1b
XM_043247950.1 mRNA downstream 5372 558256 ~ 563214 (-) True slc35d2
XM_043247017.1 mRNA downstream 36198 362578 ~ 532388 (-) False fbxl17
XM_043247016.1 mRNA downstream 36212 362578 ~ 532374 (-) True fbxl17
XM_043247018.1 mRNA downstream 36212 448521 ~ 532374 (-) False fbxl17
XM_043247900.1 mRNA downstream 273316 202147 ~ 295270 (-) False efna5b
XM_043247522.1 mRNA upstream 1616 572583 ~ 576178 (-) True LOC122350794
XM_043246779.1 mRNA upstream 10062 581029 ~ 586701 (-) False ubox5
XM_043246782.1 mRNA upstream 10062 581029 ~ 586646 (-) False ubox5
XM_043246781.1 mRNA upstream 10062 581029 ~ 586636 (-) True ubox5
XM_043246776.1 mRNA upstream 17831 588798 ~ 601844 (-) True lzts3b
TU88852 other upstream 156222 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 564434 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 569731 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 780943 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 1005838 1576805 ~ 1578744 (-) True G60220

Expression Profile