RNA id: XM_043246159.1


Basic Information

Item Value
RNA id XM_043246159.1
length 4232
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC122349987
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 723145 ~ 731844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCTGtaatgtgaagctgctttgaaacatcTGTATTCTATGAAcggttttataaataaatgacttgacTTCAGTGTGGCCTGTTTTTACCAGTGTTTCTGGATTGTTGAACGAGAACGCAGAAGCCCTGCTCTGTTTCAGGCATCAGTGACCGtgcagaggaagaggaagcggtGGGCGGGGCTTGCGTAGATGATTGACAGGCGGAGGGATTGACCTCACCATCGTGCGATATGAAGTAACCGGAGATAAAACGGAGACGCACGTCGGACCATCGCCTTTAAACGCTCACGATTCACTCCCGTTCACAAAGAAAGACACGGAGCTCGACGAACAGATTATCTCCAGCTTAACTAGTGCGTTCGTGTTAACAAGTCCAAGAGCCgatgtaaataaatgctcagCTATAAGTTCTCCAAAGGCTCCAGAAGTGTGTTGGCGGACCTGAGAATGTTCGAGACTAAAGGGATCTTCAGTGTCTGCGTGGACCTGAGCTGTGTGCTGCTCGCTGGGCTTCCGTTCGCGATATTGAACATTCAGCACACGCCGTTCAAAAGAGGCTTTTTTTGCAGCGACGACTCCATCAGGTACCCCTTTAAAGAAGACACCATCTCCTACCAGTTACTGATGGGAATCATGATTCCTTTCGCGCTGCTGTTGATAGTCTCCGGCGAGTGTTTGACCTTGTATCTGCGCTCCAGAGCTTCTTTCGGCTACGAGTACGTAGCGTGCGTGTATAAGGCCGTGGGGTCTTTCGTGTTCGGAGCGGCGCTGAGCCAGTCCCTGACGGACATCGCCAAGTACACCATCGGCCGGCTGCGACCGCACTTCCTGACCGTGTGCAAGCCGCACTGGAGCCTCATCGACTGTAAATCGGGTTACATCGAGAACTTCACGTGCACTGGAGACGCAGCCGCCGCCAACGAAGGCCGGCTTTCGTTTTATTCTGGCCACTCGTCGTTCTCCATGTACTGTATGCTGTTCCTCGCTctctATCTCCAGTCTAGACTGAGAgcaggttatatatatatatatatactcacacacTGGTCCGGCCGACTCTGCAGTTCTCTTCATCACAGTACGCACAACAAAGTGTTATTTAacatgtgattaattgtgtgTTTCCAGCTCTATCTCCAGTTAGGTTGGGTGGGTCTGTCGCGCTATctgattataaattataaacacCACTGGAGCGACGTTCTCACCGGACTCTTGCAGGGAGCCGCCGTGGCACTGTTTACTGTGTACTTCGTATCGGACCTGTTCAGCCCCAGACGCACCTCCGATAAAGACGAGGAGATCTCGCACACCAGTCTTCAGGAGACGTCAGATCCTCCCAACCACTACGGCAGCACGGAGTGAGACCAAGCGCACTGGACACGGAAGGAGATGAAACACGGAACATCCTTACAGTAACACGCAGTCCTTTCCACAACAGAGTCACTGTTTTGTTACCGGCGaggaaaaaaagtttcattttccTAATGCACGGCGGTAGAGAAAACTCAATGTCATTGTGATAAATACAGCGGCGGTAAAACATTATTTGCTTTGCAGCGGCTGAAtgtgtgtctctggagcacGGACGCAGTCCTGAGAGAGACGCTGTTTTTGTAGAAATAGAcagcaatacattttatgggtcacagttatacatttttcttttatgccaaataataggatattatgtaaaaatcGTCTTCCATAGAGATAGTttaagtaatatgcattgctaaggacttcatttagacaactttgatggtgattttttttttgcaccctcagattccagatataacaaaccatgcatcaacAGAAAGCTTCCCTATTCGGCTTTAAAATGTGAGATTTCAAGAAATTGACCATTAcggctggttttgtgctccagggtcacatatacacacactcccAGTTATTGCACTGAACGTGGCAGTGTAAAAATAGAGACCTCATAGGGTTATTTATTCCCCTCAAGGTCCCTGCTCAGAGTTTATGCAGAGGCAGTGAATCATGAACATCATTGGGAATGGTGCAGTACAAGAAcacggaagaaagaaaaacattcccATCATGCCACTAAACTTGAACTTTTGCTGCGGTGCACTCCGAGCAGCGAGCGCTTTAGATCCTACTGGGCTTTCAGGAATCCAGACTGCTGTTTTTCCCAAATCAGATCAAACGATGAAGAACCTTTTACGTGCATGGGACCTGTTCCATTGCATTAAGGTTTTTTAGACTATTAATGTTCTTCAGGTTAAGAAAAGATGGTTTAGTGAATGgttcgggttttttttttttatgcatccaTATCTATCGAACAATTCAACATTTCTGtcttataatattaataaccaaCACGAGTGTAAATGTCTTATTTCAGCaaggatgtttttaaatgtgaaatgaagaCGGTTGCAACCAACGGACTGTACACTTGACTCtaagacactttattttatgatttacagttgttttaaaGGTAATGTTTTTGCATCAAATTGTCATGAGAAAAAGGAAAGTATGTAAGGGCCAAAAACGAACAACCAAAGTGTCTCATAGCATTGaatgaaacaattttttatgtattgttattgttttttgtatgcaaaggGTTGTTTAATTATGATGTTTAATGCAAACGTTGTTatcgttttatttaatgcaaatggtAAGACCACAAGCTGTAAATATCCAAGCACTTGAATAACAATTTCTGCCTTTAATAGCTTAACGTGTAGCTTTGTATGCATCACGCACAAAGACGTTTTCTTTAGCTGCTTTACTTTTAATTCATTGGCAGCTGTGCTCGTGTCAACCAATGAAATATGGTACTGTAAACGATTCCTTCGCAATTAAAGCTCCGCCGGACCAACTGTGGTGTAGTTATTGATAATCAACTAATCATCATCATAATTTTGTCCTCGGTGGCGCCTCTAGCGGACAGATTAATCTTCTGTTTTCAAGCTTTGCTCAGTTTGATTCGCTCGGTTCGCTCGGATCGAACCTGTTCAAAACGCGACTCGCGGATCCTGAGCCGAAGCCTTCCCTAGGTACACGCTCCGCGATTCGGTTCCTTTGAATCGCTAAGAAGAACCGAGTCAGCATAGCGAGTTGTTGGCGAATCGAACGCCGCCGCTGTTCTTTGTCCTCGCGGTGACTGACTGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGTCTATGGAGGCTGAATCTACATTCTGCATTATCAGAtcattgtgttttaatgatCATCTGTGTTCTGATCCCTCCTCATTTCCTATTTCCATCAGAAGACGACAAACATCTCAGATCTGCTCCCTTCCTGAGAACAAAACACACTAAAACCAGAGCTAACACATTTAGAGCATAAACTACTGTCTGTATGTCAAGTGCTGTAGTTTAACCCACATCAGTAGCTCTAGAAGAGTGACTCATGTATGTCCCATCCAGCTTTGGTAGTCAACATGTatgtaaattcctgtaaaatggATGCATTTTGTGCTTGGATGATCCCACGCACCTTTAGCTGTCACCTGCATAACGTGTGCTTCATTCATCGCCCTTCTGATTTTACACGGTCATTCACAATCATGTTAtgaggaaaagcaaaaaaacaacagacaaaaaaaaaacggccaAAGTGGTAGCCTAACACGCAGACGATTGGCTCCAATTGCATCGAATGCGATGTCCAAATTGTGTCCAAAATGTCATCCATTTGGCAGGGATGTTGATTTCCTGCACTGCTACTGAGATCCTCTATTAGAGCAATGCAAATGTCTATTGTTTGGTTGTGGTTTCTCTACCTTTTGTTCTGGTAATAGACTTCAGTGCATGAAtcacgttattattattattattattcatattattttgattCTACATTGAATAGACTCCAATGTAATCTTTCTGTAGTCAAGATGTACCCTGCTGTACTGTAACGTGCTGTAGCCGATGCATCTGCTCATTGGATGTTGCTTTTGTTCTGTTAACCCTGTACTGAGCATGGTGGGCCTTGCTATTGGtcaatgttgttttatttgttgcatgGACTTATTATTATGACACAAATCCacatatatactaatatttttcaataaagaaTATAGTATTTTTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88829 lncRNA downstream 62047 660435 ~ 661098 (-) True G60036
TU88788 lncRNA downstream 105673 615281 ~ 617472 (-) True G60016
TU88300 lncRNA downstream 171263 514767 ~ 551882 (-) True G59739
TU88322 lncRNA downstream 175234 545919 ~ 547911 (-) True G59750
TU88239 lncRNA downstream 486488 236074 ~ 236657 (-) False G59688
TU88853 lncRNA upstream 996 732840 ~ 734242 (-) False csgalnact1b
TU88859 lncRNA upstream 23780 755624 ~ 756643 (-) True G60061
TU88877 lncRNA upstream 84617 816461 ~ 820768 (-) True G60079
TU88887 lncRNA upstream 100883 832727 ~ 835131 (-) True G60085
TU88879 lncRNA upstream 113575 845419 ~ 852159 (-) True G60080
XM_043247533.1 mRNA downstream 92000 630354 ~ 631145 (-) True fabp1b.1
XM_043246783.1 mRNA downstream 112231 607450 ~ 610914 (-) True sprb
XM_043246776.1 mRNA downstream 121301 588798 ~ 601844 (-) True lzts3b
XM_043246782.1 mRNA downstream 136499 581029 ~ 586646 (-) False ubox5
XM_043247330.1 mRNA upstream 949 732793 ~ 739372 (-) True csgalnact1b
XM_043246162.1 mRNA upstream 11349 743193 ~ 747336 (-) False spinb
XM_043246161.1 mRNA upstream 11349 743193 ~ 747326 (-) False spinb
XM_043246160.1 mRNA upstream 11349 743193 ~ 747326 (-) True spinb
XM_043246163.1 mRNA upstream 11349 743193 ~ 746684 (-) False spinb
TU88755 other downstream 152172 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 403557 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 408854 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 620066 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 844961 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 844961 1576805 ~ 1580616 (-) False G60220

Expression Profile