RNA id: TU88853


Basic Information

Item Value
RNA id TU88853
length 1340
lncRNA type sense_over
GC content 0.41
exon number 2
gene id csgalnact1b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 732793 ~ 739372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaaaggtaaaaaaagaaataagtataaaatataaaatataaagtggcagTGTGAATGACCAATTTAAGGTGACTagtgcaatataatatataatactaaatagCATTTTTAGTCGTTACAGAGTAATTGTGTCAGTTACAGCGTAATGAGCGTCTTATACTTCCTTTCAGTGCTGAAACAGAATAATAACTGATTTCCAAAACATTAGCAACCAAAAAGACGGCAAACGGCGAGTTCTGTCTGGAAGTATCAAGTAGCTTGATTTCTTACATTTCAAAAGATCTCATGCAGTTCCTTGCAGGCTTTCTGTGATGATTGCGTGGAAATCAACGAGAGGAATGATGGAGATCAGTCTGATCTCGACCAGAGAGAGCTGAGAAGTCATTTGTGGGAGAAAATAATGCTGAAAGTTATatatacttacacacacacacatatacacacataataccatacacatatacatataagaAAATGTTATGCAATTTCTAGTTCAgacatttgtgtttaattcaaagttttaattgctatttttaactacttaattGTGAAATTACGCCATGTTTTATTACagatatttcatgtttttgttgcacACACACTATGTACGTGATATGCATGATGTTATATATCCTTGCATTAAAGCGTGTTTATTAGCAGCTTATATAACACATACAACGTTTTCCGATAGATATTACATGACTGCTGGTAGAGTAATTAAGTGCATATCTCGATGCACAAAAAGGACTATTTAACTCTCTTTCCATTAAGTCGCTGGTTTGATGACAGAAGTGGAAATTCATAATGCAGCACCTCAGAAACGATGTTTTTCCGGCTTTAAGAGAGCGCTCTCTTACAGGTAAAAAGGTGTTTTATCCGGTGATGTTCAGCCTGTATAATCCAGAGGTCATCTATGGTCAACACATCCCTTCTGCTGAAGATCAGCTGGTAAAACCTCCTTATTCTGCGTCGCTTTTCATGTAACACCAATCTGAAGCTGTGCGTGAAAACGCTCCTCTCTTTGTCAGGTGATCAGGAAAGACTTGGGCTTCTGGAAGGATCTGGACTTCGGGACGACGTGCCAGTACAGATCGGACTTCATCAACGCAGGTGGCTTTGTGAAAGGCGGAGCCGCGGGAGATCTTCACCTCTACAGGAAGTTCCTCCACAGCAGGCTGGTGGTGGTCCGCGCTCCGTGGCGAGGCCTGTTTGACGTGTGGCACCCCACCGTCTGTCACGCGCACGCTCCCGGAGAGACCTTCGAGCTGTGTCTGCGGGAGAAAGCGCTGAAGCAGGCGTCTCACGGTCAGCTGGGACACATCCTCTTCCGCCAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88767 lncRNA downstream 5811 725264 ~ 727029 (-) False LOC122349987
TU88765 lncRNA downstream 7840 723190 ~ 725000 (-) True G60003
TU88829 lncRNA downstream 71742 660435 ~ 661098 (-) True G60036
TU88788 lncRNA downstream 115368 615281 ~ 617472 (-) True G60016
TU88300 lncRNA downstream 180958 514767 ~ 551882 (-) True G59739
TU88859 lncRNA upstream 21382 755624 ~ 756643 (-) True G60061
TU88877 lncRNA upstream 82219 816461 ~ 820768 (-) True G60079
TU88887 lncRNA upstream 98485 832727 ~ 835131 (-) True G60085
TU88879 lncRNA upstream 111177 845419 ~ 852159 (-) True G60080
TU88919 lncRNA upstream 141717 875959 ~ 876869 (-) True G60112
XM_043246159.1 mRNA downstream 996 723145 ~ 731844 (-) True LOC122349987
XM_043246157.1 mRNA downstream 7870 713366 ~ 724970 (-) False rnf165b
XM_043246156.1 mRNA downstream 7870 713366 ~ 724970 (-) True rnf165b
XM_043247533.1 mRNA downstream 101695 630354 ~ 631145 (-) True fabp1b.1
XM_043246783.1 mRNA downstream 121926 607450 ~ 610914 (-) True sprb
XM_043246162.1 mRNA upstream 8951 743193 ~ 747336 (-) False spinb
XM_043246161.1 mRNA upstream 8951 743193 ~ 747326 (-) False spinb
XM_043246160.1 mRNA upstream 8951 743193 ~ 747326 (-) True spinb
XM_043246163.1 mRNA upstream 8951 743193 ~ 746684 (-) False spinb
XM_043247362.1 mRNA upstream 25976 760218 ~ 770520 (-) False lrrc2
TU88852 other downstream 1220 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 161867 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 401159 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 406456 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 617668 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 842563 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 842563 1576805 ~ 1580616 (-) False G60220

Expression Profile