RNA id: TU88859


Basic Information

Item Value
RNA id TU88859
length 996
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G60061
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 755624 ~ 756643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgcgtgtgtgtgtgtgtgtgtgagtgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctctctgaCCCTGCTGGTCGTGATCCGTGCAGTGGGACACCAGAGCGCTCACGGCTGGGAAAGTGATGCTGGACATGGCAGCGACGGCCCCGGCCGCCCACATCATCCtgtcaacaacacacacacacacacacacacacacacacggttacTAACGGCGCTCACAGCGGTCTCCATCACGACAGAACCTGACGCTCACCATGCTTCAGAGCCGAAGCCGTACCAGGCCAGCTGGAAGAGCTGGAAGCCCAGACCCAGCAGAACGGTGCTCTTATTCCCAATCTTCTTCATCAGGACGCTTAACAGCAGCGTCTGCACGGACGAAGAGTGTTCAAAGTATTAATAATGAAGAAATTAAGAGAAAAACATCACTACGAGACTAATAATCAAAatacagatgcttttattttttatattattattattattctttgctgttatatatatatataaataaaagaaccaGTGATATAGGAAATGTATTGCctgctttattttatatctaaacACAAAATCTTCTCAgtgtttctgtcttgttttctagtataaatatctaaatattgttGAATGAAGATGCATTTACTATTTAGAAGCAAAGCtgtcttaaaatattaagtcttgttttaaacatgtttttacttgaaaaaagcaaaacaaaccacCAATGAAGTGaacaaaacaatattgttttctgttttaaatgtgtgtgttttaaataagattatttagcttgttcgaagcaaaaactcattttgacttgtttttttctgaataattattaaaaagcattttttgctgTGTATGTCATGTCTTCATATTTatcctgtctctgtgtgtgtgtgtctgtctgtctgtgtgtg

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88853 lncRNA downstream 21382 732840 ~ 734242 (-) False csgalnact1b
TU88767 lncRNA downstream 28595 725264 ~ 727029 (-) False LOC122349987
TU88765 lncRNA downstream 30624 723190 ~ 725000 (-) True G60003
TU88829 lncRNA downstream 94526 660435 ~ 661098 (-) True G60036
TU88788 lncRNA downstream 138152 615281 ~ 617472 (-) True G60016
TU88877 lncRNA upstream 59818 816461 ~ 820768 (-) True G60079
TU88887 lncRNA upstream 76084 832727 ~ 835131 (-) True G60085
TU88879 lncRNA upstream 88776 845419 ~ 852159 (-) True G60080
TU88919 lncRNA upstream 119316 875959 ~ 876869 (-) True G60112
XR_006251688.1 lncRNA upstream 167805 924448 ~ 946339 (-) False LOC122351117
XM_043246162.1 mRNA downstream 8288 743193 ~ 747336 (-) False spinb
XM_043246161.1 mRNA downstream 8298 743193 ~ 747326 (-) False spinb
XM_043246160.1 mRNA downstream 8298 743193 ~ 747326 (-) True spinb
XM_043246163.1 mRNA downstream 8940 743193 ~ 746684 (-) False spinb
XM_043247330.1 mRNA downstream 16252 732793 ~ 739372 (-) True csgalnact1b
XM_043247362.1 mRNA upstream 3575 760218 ~ 770520 (-) False lrrc2
XM_043247363.1 mRNA upstream 3575 760218 ~ 770511 (-) False lrrc2
XM_043247361.1 mRNA upstream 3575 760218 ~ 770511 (-) True lrrc2
XM_043247364.1 mRNA upstream 3575 760218 ~ 770510 (-) False lrrc2
XM_043247366.1 mRNA upstream 3575 760218 ~ 770505 (-) False lrrc2
TU88852 other downstream 24004 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 184651 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 378758 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 384055 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 595267 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 820162 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 820162 1576805 ~ 1580616 (-) False G60220

Expression Profile