RNA id: TU88877


Basic Information

Item Value
RNA id TU88877
length 1620
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G60079
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 816461 ~ 820768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGGTTGAGCGAATGCTGTCGTGCGTCTTTAAATCACAAGCATCTCAAAACCTTCCTGAGCCATCACCACGACCTCAAACATTCACTCGACGCAAACTTTATTCAGTACACAGTTTTTCATTCACGATTCAGAGTCTGCTCAACACAAAAGATCCTTTCATTTTACACATGCATCTAAAAGCACTGGCTCAGCTTGTATTTGATTGAACGCTTGTATAAAACAGCAAATGAGAACTAGTTCTACCCATGATGGTCTTTTTTTCACAGTACTTGCATTCAAAAGCTTAAAACATTGCGATATTGACCGGAACGGCCGTCGTCTCCGTGGCGTTTCCTCCGAGGGAAGTACCTTAAAGCTCGGACGCGTTCTCCATGGAAACGAGAGATGTCAGACGCTCCTCAAGAGACATGATCTTCAGCGCCATGACGCAGGAGGAAACCAGAAGAACGCAGGTATGTTGACAGCGGCGCTGGTTTCTTGTGTGTGAGAATCCAGTTCCTCATTTCTTTCAGTCACTTCAATACAAGCTTGGGGCCGTTTTGTGAACTCTGTGACAGAATAAGACGTGTTGAGAAAGACTTGAGAGCTGAAACACTCCAGAGTGATcagaactcacacacactgggGGTTTTGATGAAGTCCGGAGACTCGGGGCAGTCGGAGCTGCTGCTGTCGTCCATGTGCTGACCCGCCTGGCTGACCGGAGCGTCCAGATCCGACAGATCCGCAGAGAAATCCTGAACACAGATGACTTACACCTTTACAAATACATGACCCAGTCctttttttagctaaaattgagattaataaataaataaatgtaataaatcatctctccactgatgtctgcTTTATGATCGGATATTATAtctctgagatacaactattagaaaatatctggaatctgagggagcgaagaaatataaatattgagaaaatcacctttaaagttgtttaaatgaagttcttagcgatgaatattactaatcagagatgaagttttgatgtatttatggtagaaaatgtactaaatatcttcaagGAACATGATCTTGATATCCTAAGGATTTATTTCTGTCTCTTACGACTGATTCTTTTCTCCAGAGACTCATCTCTATGCATCAACTTGTCAAAATAACAGAAGTGggttttaataacaaaaagagGCCTGAAGAAACGCATCGCTGCTGTAACTTACAACCTGAAGAAAGTGACAATGCAGGTTTGAAAATGGTttgaaaactgaagaaatgcATGTGAATTTGAATCAGTTCAATGAACAGCGGAGTCTGGTGAACAAATGACTCCTTGtaatgaatgagtgtgtgtgtgagtgtgtgtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgagagtgtgtgtgtgtgtgttgtgtgtgtgtgtgattgagagtgtgtgtgtgtgtgtgtgtgtgtgattgagagtgtgtgtgagtgtgtgtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgagagtgtgtgtgtgtgtgtgtgtgtgtgtgattgagagtgtg

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88859 lncRNA downstream 59818 755624 ~ 756643 (-) True G60061
TU88853 lncRNA downstream 82219 732840 ~ 734242 (-) False csgalnact1b
TU88767 lncRNA downstream 89432 725264 ~ 727029 (-) False LOC122349987
TU88765 lncRNA downstream 91461 723190 ~ 725000 (-) True G60003
TU88829 lncRNA downstream 155363 660435 ~ 661098 (-) True G60036
TU88887 lncRNA upstream 11959 832727 ~ 835131 (-) True G60085
TU88879 lncRNA upstream 24651 845419 ~ 852159 (-) True G60080
TU88919 lncRNA upstream 55191 875959 ~ 876869 (-) True G60112
XR_006251688.1 lncRNA upstream 103680 924448 ~ 946339 (-) False LOC122351117
XR_006251687.1 lncRNA upstream 108933 929701 ~ 946339 (-) True LOC122351117
XM_043247912.1 mRNA downstream 7310 803023 ~ 809151 (-) False nudt12
XM_043247913.1 mRNA downstream 7310 803023 ~ 809151 (-) True nudt12
XM_043247783.1 mRNA downstream 30039 783648 ~ 786422 (-) True srp19
XM_043247362.1 mRNA downstream 45941 760218 ~ 770520 (-) False lrrc2
XM_043247363.1 mRNA downstream 45950 760218 ~ 770511 (-) False lrrc2
XM_043246380.1 mRNA upstream 64424 885192 ~ 914375 (-) True prdm6
XM_043246379.1 mRNA upstream 64424 885192 ~ 914374 (-) False prdm6
XM_043247406.1 mRNA upstream 127131 947899 ~ 961374 (-) False snx2
XM_043247404.1 mRNA upstream 127131 947899 ~ 961368 (-) True snx2
XM_043247405.1 mRNA upstream 127131 947899 ~ 961362 (-) False snx2
TU88852 other downstream 84841 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 245488 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 314633 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 319930 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 531142 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 756037 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 756037 1576805 ~ 1580616 (-) False G60220

Expression Profile