RNA id: TU88902


Basic Information

Item Value
RNA id TU88902
length 2638
RNA type TUCP
GC content 0.38
exon number 2
gene id G60098
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1135401 ~ 1138152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaaaggTCGTCATACATTTAGACTAAATacaaacacagaagaaaaagcCTACTGTATAGAGGTCAAATTTagattaataatgatttaaaatggtttcattTACATACTAACATTAGAGTAtgttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttattgtccCTCTTTCAGATTGACATACTTCATGTATTTCCTTGAGGAACAGCTCTGAATAAGATAAGAAGTGTTTTCTCAGATTATATCTCAACTCTGAGTATGTTTTGTCTTACTGTACTAGCctgtattttcactttttattcttgaaacaaaaacaaaacaatcagcGCAGTAAGATAAAATATACTGAAGATACAGCCGATGAAaccacacacagaaaacaactACATGCTTTCCATTTTAAGAAACCTTCTCTCTGACGGGTGTGTGAAGAGTGCCTGAAAGTGTCTGATTTTAAGAGTACTTctttcataatttactcactctggagtatttccaaacctgtatgacttcatTTGTTCTGCcgaaacacaaaggaagatattttgaagaaggttTATAAGCAGGCtgttggtccccattgacttctatagtaggaaaaacaaTTAGTATGGAtttcaatggtgacccaaaacagcccggttacaaactttcttcatttttgggtgaactattcctttaagtatgTTACTTATAATAAGTACAAGGTTAAAGAAGGACTGGATAAAGAGACGTGCCAGCAACGCTGTGGAGAAGCTGGAGGAAATAGACAGATAGTCCAgatatttcatgaaaaaagggaacaaagaacagcattatattcaacaacaacaaagaactATAGACACAGGGTAACAAGATAACAAGACTAACCTGGGCAGAATAATCCAGGAGAACCAGTGAACAAACAGACTACAAACTGACTACAAACACCACggcagacaggaagtgacacaAGAGTCTAAGACAAGGCACGAGAAGAACAAAAACACGGAAGAGTTGTTAATTAAGTTCATAACATTCATGTTTAGTTTTGAGATCTGTGTACAAACACGTTCATGAATGAAGAACACCATGAACTACATTTATGTTATGACTATTGACTAAAGAAGACTAAAGACGATTCTTTAGAATCAGTAGAAATCTGCCCTGGTTTTTGAACTTTTATAATCTCTCTTTTCCAGTTAATGAAAACAAACCTTGATATCTGAAGCATTTatctcagcttttttttttatatttttaactggaaaacaagataaaaaggACTAATTAATATCTGATCTGGGTCATTCTATCAGTGGAGCGCCTCCTAATAAACACATCATGTTTGGATGAATCATAACGAACCTCCGGAGGAAACACGGTTCCTCAAATCCCGAACACATGAACAGATGAGCACTAAACGGattaaagcaataaatcacCCAAAAATCAGGATCGactcattatttattcaccctcatgtcgatCCAGACCATATGCTGTTAGTTTCTGGGGAACTCCGGGGTTTCAGGCTGGTTTTGGAGCTCGAGGTCActgcgagagagagacagaacgGAGATGTTGGTGAGTTTGACTCCGAGCTGAAGACTAACACAGATCTTTGTGTGAAACCCAATCtgagagacagatggagaaaacGTGCGGCCGTGGGATTTTCCGCATGGATCCATGGGCACCTGGATTTGGGAAACAGGATTAGCGGACTTCTTGGCTGTGCTGAGATACGAAGGAGGATCTTCTGCTGGAGAACTTGAGAAGCTTTCATCAAAGCCAGGTGTTCTGACAAATAATGAAGCATCCAACGCTGTTTTTTAATACTGTTAGGTAGTTTTAGGTGTATGTGTTAACAAAGCCTCACACCACAGTAATATCATGCTGGGAGCTAAATCAGTTGTTTTAATGGGAGAGAAATACAAAGATGGTAAACCTCTATACTgatgaatgtctttgtttttcttgtcccatgtgctctacgtgccctactttctgttgATTGTCTCATTGTATTCAGGTGTGTCTTGataatttagtaatttcctgtgtgtttataagttccagtttgtttcagttctcATCTTTAatatgtttgtctgtctgtctgtctatagtgtaatatatattcaatgcATAATAATGTAGGTAGTTGAAAGAGCTATAGGTATATTGAATATAGGTAGATAAATAACAATTGCACTGTGTCttatggtgtgacagcaaaaatataaaaaaagcaagcaaaacctacacaaaatatcttcagttttagagttaaaaacagcatgacagaggtttatcttcaatgttaaCTGTTTTTTGTCACACCATAGAACACAGTGATATGGCGACTActtgtatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88973 lncRNA downstream 13168 1120928 ~ 1122233 (-) True G60153
TU88952 lncRNA downstream 70201 1064397 ~ 1065200 (-) True G60133
TU88950 lncRNA downstream 73163 1061093 ~ 1062238 (-) True G60131
TU88929 lncRNA downstream 123583 1011367 ~ 1011818 (-) True G60118
XR_006251688.1 lncRNA downstream 189062 924448 ~ 946339 (-) False LOC122351117
TU88974 lncRNA upstream 46156 1184308 ~ 1184649 (-) True G60154
TU88999 lncRNA upstream 76155 1214307 ~ 1218802 (-) True G60170
TU88997 lncRNA upstream 93924 1232076 ~ 1266809 (-) True G60169
TU88994 lncRNA upstream 126447 1264599 ~ 1266232 (-) True G60166
TU89017 lncRNA upstream 130646 1268798 ~ 1269384 (-) True G60187
XM_043247203.1 mRNA downstream 77474 1016890 ~ 1057927 (-) False dmxl1
XM_043247200.1 mRNA downstream 77474 1016890 ~ 1057927 (-) False dmxl1
XM_043247202.1 mRNA downstream 77474 1016890 ~ 1057927 (-) False dmxl1
XM_043247201.1 mRNA downstream 77474 1016890 ~ 1057927 (-) False dmxl1
XM_043247199.1 mRNA downstream 77474 1016890 ~ 1057927 (-) True dmxl1
XM_043248013.1 mRNA upstream 5719 1143871 ~ 1159286 (-) False commd10
XM_043247785.1 mRNA upstream 22248 1160400 ~ 1168457 (-) True ap3s1
XM_043247787.1 mRNA upstream 22467 1160619 ~ 1168457 (-) False ap3s1
XM_043246297.1 mRNA upstream 106682 1244834 ~ 1248364 (-) False LOC122350094
XM_043246296.1 mRNA upstream 106682 1244834 ~ 1248364 (-) False LOC122350094
TU88852 other downstream 403781 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 564428 565886 ~ 570973 (-) True ccl27a
XR_006251689.1 other upstream 2546 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 213758 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 438653 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 438653 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 463369 1601521 ~ 1605113 (-) False LOC122350657

Expression Profile