RNA id: XM_043246612.1



Basic Information


Item Value
RNA id XM_043246612.1
length 1041
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC122350266
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1349171 ~ 1356953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGCGCATGCGCAAACATGCACGCACGGTTCAAAACAATAGTCTCTTGAATGTGTGAGATTTGTTATTATACATCATAAACAGCAGACGTACGCTCTTATTGAACGCCACACGCATCAAACCACAACATTTTCCTCTCAGGAGGCTGAGATATAAAGCGGACCCGTGCTGGAGCGGCGTTAAGAAGACCCCTGTTTTGTTGACGATGTGCAGGCTGAGTGTGGGATGGACACGTACCCGGCCGTGAGAGACGACCCGTCGGATGCCGCCAGGCAGCAGGAGAGACACTATTACCTGCTGTCAGAGCTGCAGACGCTCGTGAAGGACCTGCCCAGCTCGTTCCAGCAGCGTCTGTCCTACACCACTCTCAGTGATCTGGCCCAAGCGCTCATCGACGGGACGGTGTACGAAATAGTGCAAGGACTGCTGGACATTCAGCACCTGACGGAGAAGAACCTCTACAACCAGAGACAGAAACTACACAGCGAGCACagagctctcAAGCAGGATTTGGTTCGGAAGCACAAGCAGGCTCTGCAGATGTGCAAGTCTCACAATCTGTCCGTTGTGAAAAGCAACCAGAGAGCGGAGACTGAGGCTCTTGATCAGCGGGTGAGAGAAGAGCAGAGGATGATGGATTTGGTGAAGGTGGTGGCTGAGATGGATCAGAAGGTTCTGGATCAGCAGAACACTCTGGAGAAAGCAGGCGTGCCGGGTTTCTACATCACCTCCAACCCTCAGGAGGTGATGATGCAGATGAATCTTCTGGAGCTGATCCTGAAGCTGCAGCAGAAAGAGACGGTGTCTGGATCTCTTCCCTGACCGGCGTGGATGAGCTCAGGAAGCGTTCTTAAGAGAACGGTCTTTTAGTTGATGACGTGACGACCGCCCGCCGCTTTTGTTTCAcgttaaatgttgttttgtaaataaatgccttgttcACGTTCATGCGTTGTCACGCCAAGAAACTATATTTGTTTATTCTTCAAACGTTTGTAAAAATACTGACTTGATTTGCATcattaaatatcacaaaaactCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89019 lncRNA downstream 37027 1311885 ~ 1312144 (-) True G60189
TU89018 lncRNA downstream 69868 1279000 ~ 1279303 (-) True G60188
TU89017 lncRNA downstream 79787 1268798 ~ 1269384 (-) True G60187
TU88997 lncRNA downstream 82362 1232076 ~ 1266809 (-) True G60169
TU88994 lncRNA downstream 82939 1264599 ~ 1266232 (-) True G60166
TU89026 lncRNA upstream 27466 1384419 ~ 1474712 (-) True G60194
TU89034 lncRNA upstream 42775 1399728 ~ 1493160 (-) False G60198
TU89032 lncRNA upstream 44536 1401489 ~ 1493160 (-) False G60198
TU89033 lncRNA upstream 44536 1401489 ~ 1493160 (-) False G60198
TU89043 lncRNA upstream 101017 1457970 ~ 1514295 (-) True G60199
XM_043247081.1 mRNA downstream 96655 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA downstream 96655 1250060 ~ 1252516 (-) True pym1
XM_043246297.1 mRNA downstream 100807 1244834 ~ 1248364 (-) False LOC122350094
XM_043246296.1 mRNA downstream 100807 1244834 ~ 1248364 (-) False LOC122350094
XM_043246298.1 mRNA downstream 100807 1244834 ~ 1248364 (-) True LOC122350094
XM_043246610.1 mRNA upstream 90047 1447000 ~ 1454530 (-) True LOC122350264
XM_043247249.1 mRNA upstream 137552 1494505 ~ 1523464 (-) True dtx1
XM_043247339.1 mRNA upstream 204593 1561546 ~ 1606609 (-) True LOC122350657
XM_043247340.1 mRNA upstream 270700 1627653 ~ 1646362 (-) True LOC122350659
XM_043246173.1 mRNA upstream 353405 1710358 ~ 1714221 (-) True LOC122349997
XR_006251689.1 other downstream 189925 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 211019 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 617551 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 778198 565886 ~ 570973 (-) True ccl27a
TU89089 other upstream 219852 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 219852 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 244568 1601521 ~ 1605113 (-) False LOC122350657
TU89063 other upstream 375911 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 392194 1749147 ~ 1753916 (-) True LOC122349998

Expression Profile