RNA id: TU89032


Basic Information

Item Value
RNA id TU89032
length 1854
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G60198
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1399728 ~ 1493160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcagaaattaaaaaagtgaCTGCCTTTATGAATCAGCcactgaatcactgactcactcGATTTGTTCAAATGGCTCATTCAGTCAGTAACGAAGCCAGTGACCGTTTAAACGATTGAGTCACTGAATCGTCGGCTCACTCAATTCAATCAAACGCCTGATTCTTTCAAAAAGCGAATCATTGGCTCACTCGGTTCATTCAAAAACGTGACTAATGAAACATTACTCGGCTGCTTACTGTGCTTAACGCAGAAGAGTctttataaaactaaatgaagaCCTATTTTACCCATTATTTACTAGAAAGCTATTTCAAAGCTAAATGAACAATCTGTCAATTAGTAGCTGATGATCTCAAAAACGCCAAATATCGTTAATTCCATTTCCTGGTATATCGGCCTGGATAACGTGGAGAAGTTTCcatgttgatgttttttaaaaccGCATCACTTTCAGACAGTTCTCCTGATGTTTTTGGCCTCCGTATATGTAACCGATTAAAGGAGGAAGCCTGTAGTTGTTGTAGATGGATCCGTAAGCAGATTTTCGGAGCCGTTTTTTGATGTTTGTGCAAGCGCTGCATAAAATATCTGCACTTCAAAACATTCAGCTCTCCGGCTCGTGTGCTACTTTTGAACTTCAGAGTAATTAGTGGAGCTCAGAGCGAACGCTGAGATTTGAGGATCCTTCTGCGTGCGTTTTAACTTTTTAGAATGAATAAGATGAATAGGATGTCTTCTTGAAATATGCAATGATTCATATCCTATCCTGCTTTGTATCTCTTTTGTGTCATTGATCTGAGAGCGCGGCTTTCTGGCTGCAGACGGGGTTTATCTGGGCTGTGTTTGGATCAGAATACTGGCATACTACTTTACTAGAGCGCCGTTTCACGACGCACCTTTTAAATAATTGTCCTTTTGAATTGCATGCGAGCGGCGTCCAGTCGTGATGTCGGTTGAATATGATTGTTGCCCATTTGTAATTAGATTTCGTGCACTGAAGTGTGCATTTAAGGCAGTCGAATGATCCAAAAATGAATCAACATCGTCAAAATTGGCATTTCTAGTTCATTTATTATGCTGGAAATAAAGTTGAGCGTTTTGCAGCGGTTCTCAACCGGGGGTCCAGGGCCTCGAAATGacttgatttaaatgatttaaaatatactttaaaaagacaaaacaagcatttaaataagctaaagcaaaattaattaattaattaaaaaaagagatgatatttattttaactaaaactaaaatcaaaagtaactaaaattgttaattggaattaaaaaaaaatgtactaaaataaaagaaaatgtatttatttttatttcagctattgCCAAAACAGTATTtcctattttctaaaattgaaagtaaagtaaaaataaaaactatgtagACTGAAATgcggaaaaaaaatagaaaaatagaaaaaatataacaattaattatttatatcatttatattatttatattctctTTCTGGTTCGTTTTGCTCCCATTATCAGGGTCACAAATAATTATATCAATTAACTAAATAACGCTAAATTAGCACTGAACcaggttgatttaaaaaaagtctgctTTCTGTCTCTTAAAAATGGTATATATGAATAGAATCTTAAACCTCCTTAAAGCGCTTTTATAACTGATGTATATTTTACTAGCTATGCCAAGATTTAAAATATGCCATCAGGTAGAAATTGAGAGTTCATGCTTCATTTTAATTCCGGTGAATCAGGAAAGATTGGAAAAGTCATGAAAGTACACGGATGAGCACTTCCAGCTCCTGAAACGTCTGCGGCCTTGAAATGTAATTATGGCCTACTTTAATTACGGCTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89019 lncRNA downstream 89345 1311885 ~ 1312144 (-) True G60189
TU89018 lncRNA downstream 122186 1279000 ~ 1279303 (-) True G60188
TU89017 lncRNA downstream 132105 1268798 ~ 1269384 (-) True G60187
TU88997 lncRNA downstream 134680 1232076 ~ 1266809 (-) True G60169
TU89086 lncRNA upstream 49286 1542446 ~ 1544129 (-) True G60217
XR_006251559.1 lncRNA upstream 157760 1650920 ~ 1655010 (-) True LOC122350073
XR_006251560.1 lncRNA upstream 164578 1657738 ~ 1659992 (-) True LOC122350074
TU89078 lncRNA upstream 168329 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA upstream 171142 1664302 ~ 1666989 (-) True LOC122350072
XM_043246612.1 mRNA downstream 44536 1349171 ~ 1356953 (-) True LOC122350266
XM_043247081.1 mRNA downstream 148973 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA downstream 148973 1250060 ~ 1252516 (-) True pym1
XM_043246296.1 mRNA downstream 153125 1244834 ~ 1248364 (-) False LOC122350094
XM_043247249.1 mRNA upstream 1345 1494505 ~ 1523464 (-) True dtx1
XM_043247339.1 mRNA upstream 68386 1561546 ~ 1606609 (-) True LOC122350657
XM_043247340.1 mRNA upstream 134493 1627653 ~ 1646362 (-) True LOC122350659
XM_043246173.1 mRNA upstream 217198 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 217200 1710360 ~ 1714216 (-) False LOC122349997
TU89022 other downstream 44558 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 242243 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 263337 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 669869 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 830516 565886 ~ 570973 (-) True ccl27a
TU89089 other upstream 83645 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 83645 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 108361 1601521 ~ 1605113 (-) False LOC122350657
TU89063 other upstream 239704 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 255987 1749147 ~ 1753916 (-) True LOC122349998

Expression Profile