RNA id: XM_043247339.1


Basic Information

Item Value
RNA id XM_043247339.1
length 4632
RNA type mRNA
GC content 0.52
exon number 43
gene id LOC122350657
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1561546 ~ 1606609 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTACGAGGAGTGTGTGAAATCGCCACTAAATCCCCGCTGCTCACGTTCCCGAGCGGAGAACCGCTGCGCTCAGAACTCCAGTACAACTCTGCTCTGAAGAGCGACACGGTTACGCCCGCGGAGTTAAGTGAACTGCGCAGCACCATCATTAATTTGTTGGATCCGTCGCCTGAAGCTGCTGCCCTCATCAATAAACTGGACTTCGCCATGTGCACCTACCTGCTGTCTGTGTACGGCTGGGTACATGAGGTTGAAGCGCGCTTTCTGACTCTCTCGTTGTGGGGGTTTCATGTGATTTTGCTCATCTCTCTCCGTGTTAGGATGCTGCACTCCAATGATGCTGGCTTCCAGGTGATGTTCAGATACTTTGAGGACAAGGCCATCCAGAAAGACAAATCAGGCATGATGCAGTGCGTGATTTGTGTAGGTGACAAAGTCTTTGAGGTTTTCCTGCAGATGATGGCTGAGAAACCCAAGACTAAAGAGCATGAGGAGGAGCTGGAGCGCCACGCTCAGTTCCTATTGGTCAACTTTAACCACACCCACAAGAGGATCCGACGGGTGGCAGATAAATACCTCTCAGGACTCGCCGAAACGTTTCCTCATCTTCTGTGGAGTGGAAGGGTTTTGAAGACTATGTTGGACATCCTGCAGACTCTGTCTCTGTCCCTGAGCGCTGACATCCACAAAGACCAGCCCGTACTCGACATTCCCGACACTCCGTACAGAATCACGGTCCCGGACACGCATGAGGCGAGGGAGAGCATCGTGAAGGACTTTGCCGCCCGCTGTGGAGAGATCTTGAAGGAGGCCATGAAATGGGCTTCTGTCACCAAATCTCATCTCCAGgagTATCTGAACAAGCATCAGATCTGGCTGTCAGGTTTGTCTCAGCACACGGGTTTGGCGATGGCTACCGAGAGCATTCTCAGCTTCGCGGGATACAACCGTCAAAGCACCACACTGgggGCAGCTTTTCCTCAGGTTACCCAGCTCACGGAGCGGCCCACCTGCGTGAAGAAGGACTACTCCAACTTCATGGCATCCCTTAACCTGCGTAACCGCTACACTGGAGAGgtCGCTGGGATGCTGCAGTTTGCTGAAGTGACACACAGCGAGTCGAACCTCAGCAAACTGATGGTTTCTCAAATGAGTGACGCTCTGGACGCCAAAGACTCGGACGCATTCACACAGAACATGTTCAAGATGACGGCTCTGCTCATTAGCACTAAAGACTGGGACCTTCAGCTGCTGCATCACCTCTGCTGGTCTCCTCTGAAGATGTTCACGGAGCAGGGCATGGAGACGGCCATCGCCTGCTGGGAGTGGCTGCTCGCGCGCGCGCGTAATGGAGCCGAAGTCCAGTTCATGCGTGAGATGGCGGGCGCCTGGCAGATGACCGTCGAGCTGAAGATGGGCTTGTTCTCGGAGACCGAGTCAGAAGCCGACCCTTTAGCTGCTTCTGAAGAGAGTCAGCCGCTGCCTCGCGTCCCCAACGTCACGCCGCACTCGCTCTGGATCGAGTGTTTTCTAGTGCAGAGATTCGAAATTGCAAAATACTGCAGTGCGGATCAGGTGGAGATCTTcaccggtgtcctgcagagggCGCTGTCTCTCAGCGTCGGTGGACCCAAGAGCTGCCTGAACCGCCACGTAGCTGCCATAGGACCCCGATTCAGgctgCTGACTCTCGGTCTCACTCTTCTTCATGCCGATGTAGTCACTAACGCCACAATCCGTAACGTCCTGAGAGAGAAGATCTACTCTACTGCCTTTGATTACTTCAGcgttGCTCCACGGTTCCCCACGCAGCCGGAGAAACGCCTGCGTGAAGACATCAGCATCATGATCAAGTTCTACGCGTGTCTGCTGTCGGATAAGAAATATCTCACAGCTACTCAGCTCGTCCCTCCAGATCCTCAGGACGTGTCGGTGAACAGTCTGTCTGTGATGGCGGTGGCGGACTCCCGGAGCAGTCTGGACGCGGCGGTGGGCTCCAGACAGCAGGCCACACAGGGCTGGATCAACACATACCCTCTGTCCAGCGGAGTCTCCACGCTCTCCAAGAAATCAGgTTTGTCAAAGAAGACGAACAGAGGAACTCAGCTGCACAAATACTTCATGAAGCGCAGGACGCTGCTGCTGGCCCTGCTGGCGAGCGAGGTGGAGCGTCTGACCACGTGGTACAATCCTCTGGGCAGCCAGGAGCTGCAGATCTCCGCCGAGCAGTCTGTGGAGACCAGCATCACTAACTGGAGGTCCAAGTACATCAGCCTGACCGAGAAGCAGTGGAAGGACAACGTCAATCTAGCGTGGAGCATCTCTCCGTACCTCGCCCTACAGCTGCCGGCCAGGTTCAAGAACACAGAGGCCATTTTCTCAGAAGTGACCCGGCTGGTTCGTCTGGACCCCGGGGCCGTCAGTGACGTTCCTGAGGCTGTGAAGTTTCTGGTGACGTGGCACACGATCGACGCTGATTCTCCGGAGCTGAGTCATATCTTGTGCTGGGCTCCGGCTGATCCTCCCACAGGACTCTCGTACTTCTCCAGCATGTATCCTCCGCATCCGCTGACCGCTCAGTACGCCGTCAAAGTCCTGCGCTCCTTCCCTCCCGATGCTATTCTGTTTTACATTCCACAAATTGTTCAGGCCCTCCGTTATGATAagATGGGGTACGTGAGAGAGTACATCCTCTGGGCAGCACAGAAATCTCAGCTTCTGGCACATCAGTTCATCTGGAACATGAAGACCAACATCTACACAGATGAGGAGGGACACCAGAAAGACCCTGATATCGGGGATCTTCTGGAGCAGCTGGTTGAGGAGATCATCGGTTCTCTCTCAGGTCCAGCTAAAGACTTCTACCAGCGCGAGTTTGACTTCTTCAACAAGATCACCAACGTCTCAGCCATTATAAAGCCGATTCCTAAAGGAGACGAGCGGAAGAGAGCGTGTCTGAGAGCTCTGTCTGATATCAAAGTCCAGCCAGGCTGTTATCTGCCCAGTAACCCTGAAGCTATAGTGCTGGACATCGATTATAAATCAGGAACACCAATGCAGAGCGCTGCCAAAGCACCGTATCTGGCCAAATTCAAGGTGAAACGCTGTGGAGTGAGTGAACTGGAGAAAGAGGgcTTGCTGTGTCGCTCGGACTCGCTGGATGAGGCTCAGAGCGGAGAAGAAGCACAGAAGATCTGctggcaggcggccatctttaAAGTCGGAGACGACTGCAGACAGGATATGTTGGCGTTGCAGATCATCGGTCtgtttaagaatatttttcagCTGGTGGGACTCGacctgtttgtttttccatatAGAGTAGTAGCTACGGCACCAGGGTGTGGCGTCATCGAGTGCATCCCAGACTGTAAGTCCAGAGATCAGCTCGGACGACAGACAGACTTCGGGATGTACGATTATTTCCGGAACCAGTACGGAGACGAATCTACTCTGGCCTTCCAGAAGGCGAGGTATAACTTCATCCGTAGCATGGCTGCATACAGTCTGCTGCTCTTCCTGCTGCAGATCAAGGACAGACACAACGGAAACATCATGCTGGACAGACAGGGACATCTCATCCATATCGatttCGGCTTCATGTTTGAGAGTTCTCCGGGTGGGAATCTGGGCTGGGAGCCGGACATCAAACTGACTGATGAGATGGTGATGATCATGGGCGGGAAGATGGAGGCCACACCCTTCAAGTGGTTCATGGAGATGTGTGTGCGTGGATACCTAGCTGTcagGCCGTATATGGATGCTGTGGTTGCCTTGGTAACGCTGATGCTggatacaggactgccctgcttCCGCGGTCAGACCATCAAACTGCTCAAGCAGCGTTTTAACCCTGGAGTGAGTGAGAAGGAAGCAGCAGCTTTTATCATCAAAGTCATTCAGAACTGCTTCTTGAGCAGCAggagCAAAACGTATGACATGATCCAGTATTATCAGAACCAGATCCCGTACTGAAGGCCAGagaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagcctCAGTGACGGAGCACATTATTGATGGGAAGCTTCTCTAAGCCATCAGTCAGACGCGTCACAAAACCTCTCAAAGAGTATTAAACTGGAAGGATACGAAGGATTTCTACATGCTGCCATTTGACTTCAACATCTCCCAGTCATTAAAAAGTACTAGAAACACTCAGTGCACAAACAAACTCAGACCATCACGTATCCCACCCAACCAAATCAGATCAACATCCAACAAAATCTGACAATACTGATACATTGCTCCAACAGCATTTGTAACAAATCACAGTTCACAACATACAAGCACAATATGACTCATTCAATATATGTGTGTCCCTTTATCATAAGTTATGCTATGAATTCCCCCTAAGATCCCAGGCTGTATAAAACATCCTCAGTCCAGCCCTGTTATACTAACCAGTGTTTAGTTCTTGAAACCTTCCCATAAGTACCTTTAGTAAGTTTGGctacatatgtatttttaagaacatGGAGACCTCTTGTGGCTGGATGAAGTTACTGCATCAAAACACTGCTCCTCCTGTAGTGTGCAGCTGTAAGTGAACACTGTAAGTAAAGAGATCACTTGCTCATCA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00888 PI4KA; phosphatidylinositol 4-kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89086 lncRNA downstream 17417 1542446 ~ 1544129 (-) True G60217
TU89043 lncRNA downstream 47251 1457970 ~ 1514295 (-) True G60199
TU89034 lncRNA downstream 68386 1399728 ~ 1493160 (-) False G60198
TU89032 lncRNA downstream 68386 1401489 ~ 1493160 (-) False G60198
TU89033 lncRNA downstream 68386 1401489 ~ 1493160 (-) False G60198
XR_006251559.1 lncRNA upstream 44311 1650920 ~ 1655010 (-) True LOC122350073
XR_006251560.1 lncRNA upstream 51129 1657738 ~ 1659992 (-) True LOC122350074
TU89078 lncRNA upstream 54880 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA upstream 57693 1664302 ~ 1666989 (-) True LOC122350072
TU89083 lncRNA upstream 66907 1673516 ~ 1684040 (-) True G60214
XM_043247249.1 mRNA downstream 38082 1494505 ~ 1523464 (-) True dtx1
XM_043246610.1 mRNA downstream 107016 1447000 ~ 1454530 (-) True LOC122350264
XM_043246612.1 mRNA downstream 204593 1349171 ~ 1356953 (-) True LOC122350266
XM_043247081.1 mRNA downstream 309030 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA downstream 309030 1250060 ~ 1252516 (-) True pym1
XM_043247340.1 mRNA upstream 21044 1627653 ~ 1646362 (-) True LOC122350659
XM_043246173.1 mRNA upstream 103749 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 103751 1710360 ~ 1714216 (-) False LOC122349997
XM_043246175.1 mRNA upstream 142453 1749062 ~ 1762549 (-) False LOC122349998
XM_043247343.1 mRNA upstream 165373 1771982 ~ 1777474 (-) True LOC122350661
TU89022 other downstream 204615 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 402300 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 423394 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 829926 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 990573 565886 ~ 570973 (-) True ccl27a
TU89063 other upstream 126255 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 142538 1749147 ~ 1753916 (-) True LOC122349998
TU89104 other upstream 142538 1749147 ~ 1755384 (-) False LOC122349998
TU89107 other upstream 142538 1749147 ~ 1751368 (-) False LOC122349998
TU89498 other upstream 452785 2059394 ~ 2061335 (-) False c8h22orf39

Expression Profile