RNA id: XR_006251551.1


Basic Information

Item Value
RNA id XR_006251551.1
length 729
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id LOC122349999
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1717401 ~ 1765543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttcattgCTGTTGGTCTCTTCATCTTGATTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACTACACAGAAGTGTAAAAATCACTTtaagaagagaagagaacaggcatgaagaaaaacaaaaaacatataaatgaaaaatataattgttataaCCCATGACTAGGGGTGCACATAAGTGGTATGCAGATAAACATATGGGCTGTATACATTCAGACCACTTTGACAGAtgttaatgcataaaaaatgcataaaaaccaTTATTACTGTATAAGATTTGCATTCAAACTTGAAGCATGAATCAAGGTTAAGCACGGATTTTTCAAAGAGAATAagtgtaaataaagtgtaataaaattatttgtttatttttatagttatatttaaaaggTCAGACCATGTTCAGTGAAAACCAAACCAAGTCTCCAGGTGAACTCATGTGCACCCCTGCTTATATCCAcaacctttacatttttattttagtttattagttttttgtttgtttggttggtttTTGCTTATGCTGTAGTATTCCTcatttgtttgttatataaaaataactgaatctGTTACTTCTGATTTCTTTACTGAAGCTTTGCTTTATGTTCACAAAGAGTAAGGGGGAGAAGCCATggtattgtatttttgaaaaatttgtatatgaaaataaaaactatacttGCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89076 lncRNA downstream 22581 1674474 ~ 1694820 (-) True G60207
TU89083 lncRNA downstream 33361 1673516 ~ 1684040 (-) True G60214
TU89078 lncRNA downstream 45635 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA downstream 50412 1664302 ~ 1666989 (-) True LOC122350072
XR_006251560.1 lncRNA downstream 57409 1657738 ~ 1659992 (-) True LOC122350074
TU89073 lncRNA upstream 7763 1726225 ~ 1780353 (-) True G60204
TU89115 lncRNA upstream 131026 1849488 ~ 1849933 (-) True G60237
TU89469 lncRNA upstream 269311 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 272873 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 272873 1991335 ~ 1994745 (-) True G60473
XM_043246173.1 mRNA downstream 3180 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA downstream 3185 1710360 ~ 1714216 (-) False LOC122349997
XM_043247340.1 mRNA downstream 71039 1627653 ~ 1646362 (-) True LOC122350659
XM_043247339.1 mRNA downstream 110792 1561546 ~ 1606609 (-) True LOC122350657
XM_043247249.1 mRNA downstream 193937 1494505 ~ 1523464 (-) True dtx1
XM_043246175.1 mRNA upstream 30600 1749062 ~ 1762549 (-) False LOC122349998
XM_043247343.1 mRNA upstream 53520 1771982 ~ 1777474 (-) True LOC122350661
XM_043247344.1 mRNA upstream 61938 1780400 ~ 1821650 (-) True pi4kab
XM_043247946.1 mRNA upstream 118661 1837123 ~ 1852539 (-) True si:dkey-178e17.3
XM_043247947.1 mRNA upstream 118664 1837126 ~ 1852535 (-) False si:dkey-178e17.3
TU89094 other downstream 112288 1601521 ~ 1605113 (-) False LOC122350657
TU89090 other downstream 136785 1576805 ~ 1580616 (-) False G60220
TU89089 other downstream 138657 1576805 ~ 1578744 (-) True G60220
TU89022 other downstream 360470 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 558155 1140698 ~ 1159246 (-) True commd10
TU89063 other upstream 14402 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 30685 1749147 ~ 1753916 (-) True LOC122349998
TU89104 other upstream 30685 1749147 ~ 1755384 (-) False LOC122349998
TU89107 other upstream 30685 1749147 ~ 1751368 (-) False LOC122349998
TU89498 other upstream 340932 2059394 ~ 2061335 (-) False c8h22orf39