RNA id: TU89103


Basic Information

Item Value
RNA id TU89103
length 1315
RNA type TUCP
GC content 0.42
exon number 5
gene id LOC122349998
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1749062 ~ 1762549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTCcctgtgtgtttgattaatgttttgGCGACAGCTGATGctgtacatgcatatattagtCCCAGTggtaaaaaattgttttgtatgtgtttatatgttatatacagCAAATctcaaaagtttggacacagcTCCTCCTCCTTTTATTCTTTAATCNAAATTTTCCCCATCATTCATGTTTATCTCGTTTCATAGAAACACAGCTTGCATCTAAAAAAGTCAACTGTAGGTtctaaataaagtgaaataaattttGTACAATTCAAATAACTCTTTTCTGTGCGAAACGATCCTGTAACGTAATTTATTGCAAAGATGGCGAAGTTGGATTTTCTGCAGGAGgaactccagtcttcagtgtcatatgatcctaAAGAAAATATTCTGTTCGGATTTAAGCATGTCCAAACGTTTGACTGGTTCTGCAATATAGTTAGCATTTGATGTTTTGAAATAACGATGacgtcatgttttttttgtcaaaacatGAAAATCCCCTGTGATGAAGAGTTGCAGTGAAATGCAGGGGGTGGAAAACTTAGCTTTTATTCTTTcacttttattgtgtgtgtgtgtgtgtgtgtgtgtgtgctctcttATTTTTCATTGACGTTGCTGTGTCATTGTATACTTTAGGTCTTGATGTTATAGAGGTTTCTattctgtgtatgtgtctgaTTGCACATGTGTCTTTCTCAATCTTAAGATCCCATGAAGTataacagtacattttttttttttaatgttacttattCACATGTGAAATTTGGTGTTTTGTAAAGAAAgggtttgtgttttgttgtcatcACTGTTCTTCTCTTGTCCTTTTGCTGCATATTCCAGCTGTGGAGTGAGGAAGTGGATAAAGCAGAACACGAGTTGCGTGTGGCTCAGACAGAGTTCGACCGACAGGCAGAGGTCACACGCCTCCTGCTGGAAGGAATCAGCAGCACTCACGTGAACCACTTGCGCTGTCTGCATGAGTTTGTGGAGGCCCAGGCTGCTTACTACGCACAGTGTCACAAGCACATGCAGGATCTTCAGAAAGAGTTGAGCAGCGCAAACGGAGATACGTTTCCTAATGCTTTTGCAGTGAATGCTTCCACGTCAGGAGTGACAGCAGGCCCTTCTCCCCTTTCCACTGACACCCTAACTGGGGCTTCTCCACCTAGTCGCCCCCCAAATCCTTCCAATGCCCTTGAGTCCAGCACGCTGAAGATCGAGGAGGTGAAGCCTCCCGCCACCGGCACTCGCAAGGCCAAAGTGCTGTATGACTATGATGCTGCAGATACAAGTGAACTTTCCCTTCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251551.1 lncRNA downstream 30685 1717401 ~ 1718462 (-) False LOC122349999
TU89102 lncRNA downstream 30685 1717401 ~ 1718462 (-) False LOC122349999
TU89076 lncRNA downstream 54327 1674474 ~ 1694820 (-) True G60207
TU89083 lncRNA downstream 65107 1673516 ~ 1684040 (-) True G60214
XR_006251558.1 lncRNA downstream 82158 1664302 ~ 1666989 (-) True LOC122350072
TU89115 lncRNA upstream 95572 1849488 ~ 1849933 (-) True G60237
TU89469 lncRNA upstream 233857 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 237419 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 237419 1991335 ~ 1994745 (-) True G60473
TU89490 lncRNA upstream 283784 2037700 ~ 2039825 (-) True G60487
XM_043246173.1 mRNA downstream 34926 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA downstream 34931 1710360 ~ 1714216 (-) False LOC122349997
XM_043247340.1 mRNA downstream 102785 1627653 ~ 1646362 (-) True LOC122350659
XM_043247339.1 mRNA downstream 142538 1561546 ~ 1606609 (-) True LOC122350657
XM_043247249.1 mRNA downstream 225683 1494505 ~ 1523464 (-) True dtx1
XM_043247343.1 mRNA upstream 18066 1771982 ~ 1777474 (-) True LOC122350661
XM_043247344.1 mRNA upstream 26484 1780400 ~ 1821650 (-) True pi4kab
XM_043247946.1 mRNA upstream 83207 1837123 ~ 1852539 (-) True si:dkey-178e17.3
XM_043247947.1 mRNA upstream 83210 1837126 ~ 1852535 (-) False si:dkey-178e17.3
XM_043247525.1 mRNA upstream 104004 1857920 ~ 1878899 (-) True si:dkey-178e17.1
TU89094 other downstream 144034 1601521 ~ 1605113 (-) False LOC122350657
TU89090 other downstream 168531 1576805 ~ 1580616 (-) False G60220
TU89089 other downstream 170403 1576805 ~ 1578744 (-) True G60220
TU89022 other downstream 392216 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 589901 1140698 ~ 1159246 (-) True commd10
TU89498 other upstream 305478 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 305478 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 707015 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 769900 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 1040218 2794134 ~ 2813107 (-) False rad9b

Expression Profile