RNA id: XM_043246175.1


Basic Information

Item Value
RNA id XM_043246175.1
length 1284
RNA type mRNA
GC content 0.56
exon number 12
gene id LOC122349998
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1749062 ~ 1762549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGCCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGTGTGAGGGAGAAGCTGCGCCTGACTTTCAGGAGACTAGGCCACGCAATTATGTTCTGTCGGCCAGTGCATCTGCGCTGTGGAGTGAGGAAGTGGATAAAGCAGAACACGAGTTGCGTGTGGCTCAGACAGAGTTCGACCGACAGGCAGAGGTCACACGCCTCCTGCTGGAAGGAATCAGCAGCACTCACGTGAACCACTTGCGCTGTCTGCATGAGTTTGTGGAGGCCCAGGCTGCTTACTACGCACAGTGTCACAAGCACATGCAGGATCTTCAGAAAGAGTTGAGCAGCGCAAACGGAGATACGTTTCCTAATGCTTTTGCAGTGAATGCTTCCACGTCAGGAGTGACAGCAGGCCCTTCTCCCCTTTCCACTGACACCCTAACTGGGGCTTCTCCACCTAGTCGCCCCCCAAATCCTTCCAATGCCCTTGAGTCCAGCACGCTGAAGATCGAGGAGGTGAAGCCTCCCGCCACCGGCACTCGCAAGGCCAAAGTGCTGTATGACTATGATGCTGCAGATACAAGTGAACTTTCCCTTCTCGCTGATGAGGTAAGACACGAGGAAGTCTGTTTTCCCTCTTTAACAATAAGCCACAAACTACTCGTAAAGTAGTCAGGCTACAATCAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251551.1 lncRNA downstream 30600 1717401 ~ 1718462 (-) False LOC122349999
TU89102 lncRNA downstream 30600 1717401 ~ 1718462 (-) False LOC122349999
TU89076 lncRNA downstream 54242 1674474 ~ 1694820 (-) True G60207
TU89083 lncRNA downstream 65022 1673516 ~ 1684040 (-) True G60214
TU89078 lncRNA downstream 77296 1661489 ~ 1671766 (-) True G60209
TU89115 lncRNA upstream 86939 1849488 ~ 1849933 (-) True G60237
TU89469 lncRNA upstream 225224 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 228786 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 228786 1991335 ~ 1994745 (-) True G60473
TU89490 lncRNA upstream 275151 2037700 ~ 2039825 (-) True G60487
XM_043246173.1 mRNA downstream 34841 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA downstream 34846 1710360 ~ 1714216 (-) False LOC122349997
XM_043247340.1 mRNA downstream 102700 1627653 ~ 1646362 (-) True LOC122350659
XM_043247339.1 mRNA downstream 142453 1561546 ~ 1606609 (-) True LOC122350657
XM_043247249.1 mRNA downstream 225598 1494505 ~ 1523464 (-) True dtx1
XM_043247343.1 mRNA upstream 9433 1771982 ~ 1777474 (-) True LOC122350661
XM_043247344.1 mRNA upstream 17851 1780400 ~ 1821650 (-) True pi4kab
XM_043247946.1 mRNA upstream 74574 1837123 ~ 1852539 (-) True si:dkey-178e17.3
XM_043247947.1 mRNA upstream 74577 1837126 ~ 1852535 (-) False si:dkey-178e17.3
XM_043247525.1 mRNA upstream 95371 1857920 ~ 1878899 (-) True si:dkey-178e17.1
TU89094 other downstream 143949 1601521 ~ 1605113 (-) False LOC122350657
TU89090 other downstream 168446 1576805 ~ 1580616 (-) False G60220
TU89089 other downstream 170318 1576805 ~ 1578744 (-) True G60220
TU89022 other downstream 392131 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 589816 1140698 ~ 1159246 (-) True commd10
TU89498 other upstream 296845 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 296845 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 698382 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 761267 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 1031585 2794134 ~ 2813107 (-) False rad9b

Expression Profile